Gene detail

Detailed information of evm.model.HiC_scaffold_29.538 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_29:3452571...3456749
NR annotation: KAJ8029065.1, hypothetical protein HOLleu_28369 [Holothuria leucospilota]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_29.538

ATGGAAAACTTAGCTGAAATACAGCCAAAACGATTGtcttttgctgaaaaattgaaatcttcAGATGGTCGAATGCTACCGGGTGATATAGCAGCGAGAGGAGCAAAGTTTGAAACCCAAGATGGGattgattttaaagaaattataaCCTTTTTCCAAGGAAAATTCAAAGACGCCTCGGCTGTCCAACAACTCATGCCTTTGTCGTCACTTCCAGGTCGACAAAAATGGAACAtaattttttccaaaccaagtaTGGTAGATGATGTTATCGACAATTTGGTTAAGTTCCCCACAATGACGAAAGAAGAAGGTGGGATTATTTTTACTCCTGTGAAACGCCGTGCACTTCTGATAACTATACCTGATGCGACTCCAGACATATCCGATAACCAAATTCGCGGTGAACTCGAAAATATGGTACTGTTCTCCGAATTTGGAAACAGACATGGAAGGGTTCCCGAATGTTTTCAATGGAAAAGGCTCGTTACAATTTTTCCAACACTATCTAAAGATCTACCACCCTTCATCGttataaacaacaaaaaaatcTCTCTGTCTTTCAAGGGCAAACCTGTTTTCTGCAATATCTGCATGAAAGATACGCATAGGACAGGTGATTGCCCTTCGAAAGACATTAAGCACTGTTACTTGTGTGGCTCCACGGATCATCAAAAAAGCAAATGCGAAAGATTTCAAGTCATCAGACGCCCGAGAGGCCGTGCTCTGTCCGAAGAAATCGCCGATATCACCGAGGAACCTTCAGAGGGGCCAGAACCAACAGGTTTCAACCAAGATTTGCAGCCAGACTCTAATGAAAATACAGAAGAGAACCCAGCCGAGACCTCTGATGACATCCCACAGCCTGTTTTAGAACCAATTTCACGTACAACAACACAACCCAAGAAACCTCCCCCATCGACAAAACCTACTTTCAAAGCCGAAACGAAGACAAGCCTTCAACCTGAACCAAAATCTGAAAGCCAACCAGACGAACCTACACCTAAATCTGCCTCTGACTATCCCCCCTTTAAAAAAGGAGCAAAAAGATCAATGGCAACGACTCCTGAGAAGAAACCAAGAAAGAAAACCATGGACCTCTCTGTTGACGACAATCGATTCATTCTTGCTAATATTTATGCCCCGACTGGAGGAAAAGACGGCGTTGTTCGCCGCAAAGATTTCCTCAAAAGCcttgaaaatgatttgaacaAGTACCCACGTACTTTTCCTTTCATCGTTGGCGGTGATTTTAATTGCGTTATCAATAACAACCTCGATAGATCTAATAAAGTTAACTATGTAGACAAGAGCACCCCAAATCTTAAACACTTCTTAAATGTTTTTaacttagaggatatctggcgtACCCAGAACCCTACTAAGAAAGAATTCACCTATCTCAGCCCTCACGGATCTTTTAGCagacttgataaattctatacCTCCCGCGAATTTCGCGATAAATTTTCTAAATGCTTTATTGATCCCTTTCCTCATTCTGATCATGACAAAATCATCTTAAAACTCGACTTCTCCTCTATAAAACGCGGACCCGGGTCCTGGATGCTCAATACTTCCATCCTAAAAGAACAACCCTTCGTGGACCTtatcaatgatttcattgaCTCCTGGAAGGGTAGAAAAGAGGACTTTCAATCCTTGTCTGACTGGTGGGAGTACGGTAAATCCCGTATCCAATCAATCTCTAAAGAATATTCTACTAAGCGCAAGAAAGACCACATGAAGAGAAAATCCCAACTCTATAAAAAACTACGAAATTCTAAACGCAAAGCCGAAACAACAGGGGACCCCAGATTTGTAAACCTAACTAAAACAATCTCAGATGAAATAAAACGCATTGAAATTAAAGAGGCTGAGGCCACTAAACTCCGCTCTAAAGCCAAATGGTCAGAACAGGGTGAAAAAGTAACCCGTTATTTCTGTTCTCTGGAAAAGAAACGACAAGGTGACCGAACCATGAGGGCGATTAAAGATAAACAAGGAACCATCGTAACAAAACCAGAGGAAATTCTAGAATCTGTTAAATCCTTTTATGAAGAACTTTACACCGCTGAACCTGCTGACGAAAATATTCAgcaaaatcttctaaaaaaaCTTTCTAAAACCCTTCCTGACGACAAGAGGCAACTCTGTGAAGGTAAAATTACCAAGAAAGAAATTTCCCTAGCTCTCAGTCAAATGGTGAATAATAAATCTCCAGGTACTGATGGTTTACCCTACGAATTCTATAAAGTCTTTTGGAACAAACTATCGGACTGCCTCCTAGATGTTATCAACGGATGTTTTGAGGATAAGAACCTAACCCCTTCGCAGAAAATCGCTCTTGTTTCTTGTCTGTTCAAGAAGGGTGAAAGAGAAAGAATCGAAAATTGGAGACCGATCAGTTTACTAAACTGCGACTATAAATTAATTGCCAAAGTTATCTCTAATCGTCTTTCACGTGTTCTCTCTTCTATTATTTCTGAAGACCAGACCTGTTCTGTTCCAGGGCGAACGATCTTATCCAATTGTCATGTTTTGCGTGATCTCATACAAATAAGCGAGGATCAAAATCTCCCCGTGGGGTTGCTTGCAATAGATCAGATGAAAGCTTTCGACAGAGTTAGTTGGGATTTTCTCTTTAAAACTCTGGAGAAACTTAACTTTGGGCCAGTTTTTATTAGCTGGGTTAAACTGCTTTACACAGACAttaaaagctctgttaaagttAACGGTTACATTTCGGAAACTTTTTCGCCCTCCCGAGGAGTCCGACAAGGTTGTCCCCTTTCAGCCCTTCTCTATGTTATCATTGCTGAGGTCTTTGCAGAAAACATCCGACAAGATCCAAAGATAAAAGGTATTTCTGTCAATAAAACCGAGTTTAAAATTGTGCAATATGCCGATGACACGACTTTAATCCTCCAAGGAAATCCCTCAATCCTTGCGTGTCAACAACATCTCTCTGACTTTGAAAAAGCCACAGGCGCAAAAATAAACACTGAAAAAAGTGAAGGCCTCTGGCtaggaagttttaaaaatagaacTGATTCTCCTTTTGGTTTCGACTGGTCGAAAAAGTCGTTGAAAATACTTGGAATCTATTTTGGACTAGATAATGTTTCTCAGTTAAACTGGAACTGTAAAATCTCGAAATTTCAGAAGACACTCAACCTTTGGAAAAATCGCGATTTAACATTCCGCGGGAAAGCTGTTGTAGCAAATCAACTTGCTTGCTCTGTTTTGCTTTATACTGCCACTATCTTCCCCATCCCTCAATGGGCTCTGAAAACCTTGAATGAGAGTCTGTGGGCTTTTCTTTTCAACGGCAAAAAGCCGCCGATCAAACGTATTCAAGCAAAGCTTCCATACGTTGACGGCGGCcttaattttgttgatattgaaaagaaagcccaaAGCCTCCAATTGTCCTGGTTAGCCAAGctgtttgacaaagaacataaagggaaatggaaagttttattcaatcattttcttgGGAAATACAAAGGGCTTAATATTGggcctaatgttttgaaatgttttctcaacacaagacaaattaataaattgccttgtttTTATAAATCGCTTTTGCAATCTTATCTAACCCTTTgtaataacaaaagatctaatccaaatcccctcgaaattttcaatgaaccttTATTTGACAACACTCTTTTTGCTAAGGACAAACTTCTATCCGTACAGTCATGGATCGATGCAGGGATCACTCTTGTTCGAGACGTGACTTACTTACGAACTCTCCCCCGGATTTCTCCCGAGTCTTGCCCTTCAAGAACTTGTAGGAGATAA

Transcript

evm.model.HiC_scaffold_29.538

Protein

Uniprot

Uniprot term	Description
P14381	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1
O00370	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1
P08548	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31635	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan