Gene detail

Detailed information of evm.model.HiC_scaffold_29.540 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_29:3465433...3470776
NR annotation: MCP3925856.1, reverse transcriptase family protein [Desulfobacterales bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_29.540

ATGGCAACGACTCCTGAGAAGAAACCAAGAAAGAAAACCATGGGTAAAGAGACTCAAACTTTCAAATCGAATAACGTAACCTATGTAGATAGAAGTGCCCCGAATCTTAAACACTTCTCAAACGTCTTTaacttagaggatatctggcgtACCCAGAATCCTACTAAAAAAGAATTTACTTATCGTAGCCCCCTAGGATCTTTTAGTagacttgataaattctatacTTCCCGCGAATTCCGCGATAAATTTTCTAAATGCCTTATCGAACCCTTTCCCCACTCCGATCatgataaaattattttaaaactcGACTTCTCTTGCATAAAACGCGGACCTGGATCTTGGATGTTAAATACCTCTACCTTGAAAGAACAATCCTTTCTCAACCTCATCAATGATTTCATAGACACCTGGAAGGGCAAAAAGGGGGACTTTCACTCCTTGTCTGACTGGTGGGAGTACGGGAAATCTCGCATCCAATCAATTGCTAAAGAATACTCAGCTAAGCGTAAGAAAGAACACATGAAGAGAAAGTCCCAGTTATATAAAAAACTGCGCAACTCCAAACGCAAAGCCGAAACAACAGGGGACCCCAGATTTGTTACCCTCACAAAAACCATATCAGATGAGATAAAACGTATAGAAACCCAAGAAGCTGAAGCCGTGAAAATCCGCGCTAAAGCAAAATGGTCAGAGCAAGGAGAACGAGTCACCAACTACTTCTGTTCGCTTGAAAAGAAACGGCAGGGTGACAGAACTATGAAGGCTATTCGAAATAGCCGAGGTATTATCGTTTCTCAACCCCACGAAATCTTAGATTCTGTTAAGGCATTCTATGAAGAGCTCTACACAGCGGAACCTACTGACGATAACTGCCAACAGGAACTTTTAGGTAAACTATCTCGAACCCTTCCGAACGACAAGAAACAAGCCTGCGAGGGCAAAGTTACCCTTAAGGAAATATCGTTAGCGCTAAGCCAAATGGCTTTCGATAGAGTTAACTGGAACTTTctcttcaaaacccttgaaaagTTGAACTTCGGTCCGGTTTTTATTAGCTGGGTTAAACTGCTTTACACAGATATaaaaagctctgttaaagtcAATGGCTATATTTCAGACACTTTTAACCCTACCCGAGGGGTCAGACAGGGATGTCCTCTTTCTGCCCTTCTCTATGTGATCATTGCTGAAGTTTTCGCAGAAAACATCAGGCAAGATCCAAAGATCAAAGGTATCACCGTTAACAAAACCGAATTTAAAATTGTACAATATGCCGATGACACGACTTTAATCCTTCAAGGAAATCCCTCAATCCTTGCTTGTCAACAACACCTCACTGACTTTGAAAAAGCCACaggtgcaaaaataaatacagacaaaagtgaaggcctctggctgggaagctttaaaaatagaaatgatTCTCCGTTTGGTTTCGACTGGTcgaaaaagtctttgaaaatccttggaatcTTCTTTGGACTACATAATGTTTCTAAGCTAAACTGGGACtctaaaatttcgaaatttcaaaagacaCTAAATCTTTGGAAAAACCGCGACCTCACATTTCGTGGTAAAGCTATTGTAGCAAATCAACTTGCTTCTTCTGTTTTACTTTACACTGCCACTATCTTTCCCATCCCTCAATGGGCTTTGAAAACCTTAAATGAGAGTCTGTGGGCCTTTCTTTTCAACGGCAAAAAGCCGCCAATCAAACGTATCCAAGCAAAGCTTCCATACACTGATGGCGGCCtcaattttgttgatattgaaaagaaagcccaaAGTCTCCATTTGTCTTGGCTAGCCaaactgtttgacaaagaacaaACAGGAAAATGGAAAGTCTTATTCACTTATTTTCTTGGGAAATACAAAGACCTTAATATTGGGCCTAATGTTCTAAAATGCTTTCTTAGTTCAAGGCAAATCAACAAACTGCCTTGTTTCTATAAATCGCTTTTGAAATCCTATCTAAACTTATGCAACAACAAAAGATCTAATCCAAATCCTGCTGTTGAAATCTTCAATGAACCATTGTTTGATAATTCTCTTATAGCTAAAGAAAAGCTCCCATTCGTACAGTCATGGGTCGATGCAGGGGTTACTCTGGTTCGAGACGTGACTTACGAGCTCTCCCCAGGATTTCTCCCGAGTCTTGCCCTTAAAGAACTCGTAGGAGATCGCTTTAGGAAAAATGATCATGATACTATGCTCTCCCTTATACCCCCCGAGTATCGAGAAATTGTTCGGAATAACGCTGCACCCCCCGATCACTTTTCTGTAGACTTTAAGCTTCCTCTCACTGGATTGAATAAACCTATTTCGAAACTAACATCGAAAGACTTTTATCACGATCTTGTTGCTTCTACTCTCGATTTACCTTCTCAGAAATTCAGACTGTTTTGGAATAACAAATTCGGCAATTTAGAttggaaatttattttcaagtcaattttctcTCGCGATAACGATCGGAAATCTTGCGATTTACAATGGAAGTTAATCCAGCTTGCCCTCCCGACAGCTGATAAACTTTCCAGACATAACATCATTGATAATCCGAATTGTTTACGTTGTCAAATAAACGTAGAGACTTCTGTGCATCTCTTTGTTCGCTGCCCTTTAGTCCATGACCTTTGGCAAACAGTAATCCAATTGACTAAAGACCTGGATCTAAATGTAAACATTGATCTTAACAACCTAGAATACTTTGTTGTTATTGGGTTTGCCTTAAATAAAACTACGCAAGCTTTGATTCCTGCTCTAACCGTTCGCGATATCGCGCTCCGCTCTGTCTGGTCAACCCGaaataaaattgtctttgatgaTGAACAGCAGACCCCTACTGAGTCTAGCACAGCTCGACTCCAAAAAAGAGGGGaagcaacaacaacgacaataacaccaccacgacttgccagataccaggcatctctcgacacaaaaattcccctactctacaaagagtgtgcaagttaccgaccgtttgccgttttccacatctttcgctccagatgccggaagatgcaccaacctttaccacattcgtacagccgcaaccggaagcccatcctttgcaacactgttaaagagcaagctgggcttccacgatgccacgcccactgttccaactggccagagtactcaccacaccttctcagcagcactgcacacccacgaagatctacctccatcaacccacttcgtacgcatccagccgtatacgtacatgtgcatgtgcacacttctgcgtctctagcctgtagtgtcatgcacattcggccctctagctttcgcctacgaccataccaccatgaatataccggttctcgtccgatcaccgcagtcaagcatggtcgggccaggtcagtacctggatgggtgaccgcctgggaacacctggtgttgtag

Transcript

evm.model.HiC_scaffold_29.540

Protein

Uniprot

Uniprot term	Description
P0CV25	Secreted RxLR effector protein 78 OS=Plasmopara viticola OX=143451 GN=RXLR78 PE=3 SV=1
P16423	Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13966	zf-RVT	zinc-binding in reverse transcriptase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026960	Domain	Reverse transcriptase zinc-binding domain	Interproscan
IPR052343	Family	Diverse Retrotransposon and Effector-Associated Protein	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46890	NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26670	RdRp; Mitoviridae RNA-directed RNA polymerase	-	Viral proteins	-	deepkoala