Gene detail

Detailed information of evm.model.HiC_scaffold_29.544 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_29:3500632...3503524
NR annotation: KXJ07682.1, Transposon TX1 uncharacterized 149 kDa protein [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_29.544

ATGGCTtatgctgctgctgctcaaAGATCTGCCTCAAAGAACAACAATCGTTCTGTAATTCCTACCTCAACTGCTGCTTTTGCAAGACTGAAGCGCCCAAACTCTGTATCTCTGCGTATTCCTTCTGGTACTCAAGTTCAACCGAGAGAAGTTTTCGATatctgcaaaaatatttttgaaattaaaccaATCTCTGTTGCCAAAAGTAATAATGGTGATATACTCGTCACAACCAACAATCCAGCTGAAAAGTCCAAGATTCTCAAGTTTTCTGCAGTCAAGACCAAGGATGGCGACACTCTTGGTATTGTTGACCCCTCAAATGTCATTGCCTATGTCAACGTTTATAGTGTACCATTTGAACTACATAACGACGCTATTGTTCGCAAGCTAAGCCGATATGGCACAGTTCATAGCATCCGCAGAGGTCACCATGCAGACATGCCAGAGTGCGAGAATGGTGCAAGGCACCTACGCATGCACCTTCATAAAGGCATTCCATCCTTCATCCACTTTGGTAGTGAATCCTTTCGTGTCCGATACTCTGGACAACTGGAGACCTGTCGCCGATGCGACCAATATGGTCATTCTGCAAGTCAATGCCAACGTTCGCGCTGTTTCAACTGCAATAAATTAGACCACACAATTGCTAATTGTTCCCTCAACCGAGTATGTGCAATATGCGGTTCTTTCCAGCACGACATCACTGAATGTGTGGAATGGACCCCCCATGAAGAGGATTTCGACGACTTTGGCCTGGAATATAATTCCCAAGCTGGAGTCGAAGAGACAATCAACCAGCGCAACAACAATGAGGAGGACGAAGACAACGCTGCTGCAGACGAGGTCGATGATGGAAAtcttgctgatgatgatgaggaagacGAGGATAATGAAACTGATGCAACATCATATGATGGTgagaaaagaaagcaagaagATTCTGCATTGGCATCTGACACTGTTGAGGAGCCGACCCCATCAGAACCACCAAGCTCTGCACCTGATTTTCGTAAACGCCAGACCATTCTCCAGTGgatcaaaaaccaaaaacaggatGTCAtctttttacaagaaacacATCTCTCTTCTGCTGATCTTGGTCTGTTGAAAAAGACTGGGAAGGCCAAGTATTTTGTCTCCTGGCAGCCAACACAGTGCCGGGCGCACGACCTCTCTGGCCGCTATTTAAATATTGTTTGCGATTTCGGCGAAGTCAACATTCAATTCTGCAATGTATACGCGCCAAACCACGTTTCTCAACGCAAAGAGTTTTTTGAGACTTTAAACTCTGTTCTGAAAGGAGGTGTCCCTACTGTTTTTGGAGGAGACTTTAACTGTGTTGAAGACTCCTTTTTGGATAAAAATGGTGGTGACTCCGACTTAGCAGTTACAGCTCTGAAAGCGTTGCAACAGCTTAATATCACGTATGATCTAAAGGACGTCTTTCGGCACTTAAACCCGTCAACGCGAGATTTCACCTGGACAAACCCAGACGGTTCTATCTCTTGTCGGTTAGACAAGTTTTATGTGTCTGCAGATATTTTCGGTAATTGTAGTAATTCTCATATAGTGTTTTTTCCGTATTCTGATCATGATGCTCCAAGTATCTCCTTTAGGCTCccgaactctttgaaaaagggcCCGGGTGTTTGGAAATTTAATACGTCCCTTTTAGAAAATCCTGTATTTGTCGAGAAAATTAAATCCTTCTGGTCCCATTGGCAACTACGGAAGATAGATTTCCGTGACTTAAATGCCTGGTGGGATATTGGCAAGCGTAAAATCAAACACATTGCCATGAAATTCTCCAAACGTTTAGCAAGAGAACGTCGCAAAAGGCGAGCCGACTTAGAGAAAAAACTCAAGCATCTTAACGCCTTAAAGCCTTCCAAGGCTAATAAGGAAGCTATTGACGTCATCAAATCTGATATTACTGAGCTTGACAACTCTCTTGTTCAAGGTGCTAAAATACGTTCAAAAGAACGTTTCTACACTGAGTTTGAGAAGCCTTCAAAATACTTCTTCTCATTAGAAAATTCGCGACAAAGCTCCAAAGTCATCTCTGCTTTGAAAAGTGAAGATGGCTCTGTTACTTCTAGTTATGCTATCTTAGAAAACTGTGCTCAGTTTTATGAAAATCTCTATACTGCTGAGCAACCAGACTTGATTGCTCAAGAGCGTCTCTCTCTCAAATTACCAAAAAGCTCTCTCAAGACGAAAAAGATTCATTGGAAGTCAAGCTTGATTTAG

Transcript

evm.model.HiC_scaffold_29.544

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR042509	Family	Zinc finger CCHC domain-containing protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22639	GAG-RELATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0002218	Biological Process	activation of innate immune response	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan