Detailed information of evm.model.HiC_scaffold_29.674 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_29:4477834...4481982
NR annotation: MCG7869026.1, hypothetical protein [Candidatus Thiodiazotropha taylori]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7SQ98Gag-Pol polyprotein OS=Avian leukosis virus OX=11864 GN=pol PE=3 SV=2
Q04095Gag-Pol polyprotein OS=Avian leukosis virus subgroup A (isolate RSA) OX=363745 GN=gag-pol PE=3 SV=2
P03354Gag-Pol polyprotein OS=Rous sarcoma virus subgroup C (strain Prague) OX=11888 GN=gag-pol PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR052055FamilyHepadnavirus polymerase/reverse transcriptaseInterproscan
IPR013762Homologous_superfamilyIntegrase-like, catalytic domain superfamilyInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR010998Homologous_superfamilyIntegrase/recombinase, N-terminalInterproscan
IPR011010Homologous_superfamilyDNA breaking-rejoining enzyme, catalytic coreInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33050REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

TOP