Gene detail

Detailed information of evm.model.HiC_scaffold_29.845 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_29:5517968...5520865
NR annotation: MCP4485229.1, DDE-type integrase/transposase/recombinase [Flavobacteriaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_29.845

atggctttgttatgtaaattttgtgttgttgggcctacggcttatgttggccgccattttaggtcaagcgttgcaatacttttgtaccctaagtgtatatcaaagcagtactttggcagaatcacgcagtttctaacactatacactgaagttttgagtaaagaagaagcatatgaggataagctggaaatctatttgcagaaaaatgatgaCAAGTTGGAAATCTGCATGGAGAAAAAACCCCCTGTGAAgctttgtcttggaatccgaagatggaagaatgagaagccatcaaagacgggaataaatctaaaagaagaaatgctgaaagcattacatggaaaggttgctgatctgaaaatgcttccacaaccatcccggaaaagaccagcgagtgacgatgatgagcagattcaaaagaagaaaaagaaacaagaagaagatccggcaaagattgatgttcaagtgcaagaagtatatgccgaaattctcctgaaatatattttcaacaaagcaaaagagtattgtgaaaagtgtgcaactacagagatgtggccaaaacaaattgatgctgttgatcataagcaagattgtatggtacataatgctttcagatttctaacatttcacattagctatgtcaactccgacatgctggctgaagggaaagaatcatttaagaaatcaatgtttgatgagctgaagaagaagaatggtcgactgaatcaaacaatcaaatccagagttgaaaatctgcatgatgaattatctcatccaactagatgtaaagaatttgttataaatagatgttgcctgttgtatgagatgtttaaagttgttataaatatgagctatgatttgagatttaaagcacctttttctttgattttatctggagtaagcggaatcggtaaaacgacttgggtagaaaatctgttgaaaaattataacaatataattgataatggcagacaatatcccaatcttatgtggatctcgggaacaaatcaaccggaattgtttgaacgcgttaaaaaaagttttaacgggaattgtagatttattactgagctacctgaaaacttgtacgaagaaatcgaaagatcggacaaaagattaactattgttgtcgatgatgtaatgcatgaaattgccaactttaaagatttgggaaaattgttcacaaaaggaagatctcatctaaacgtcaatgtaattgttatgatagctctcaatactcagtatcaagttcttttcaagaatcctcaagatagaagtcaaattagatttcgtGCGCGggaaattatgccctcatctccaaaaacattccttgacatttacaatgatgcaacagcaagaatgtacggctacttactttgtgatttcacacaatcgattggagaagatatgagatttcgcactaatattttccctaatgaagctcctttagtggtgtacaagtctaaaaaagaaattttatccgaaagaaaacctaaaaaggtacgatccgacaaaggcagcgagtttataaacaaagaattccaagctttgttgaagaaaaacgatattggattttacactgcaaataatgaagttaaggcagcaattgttgaacgatttaacagaacattaaaaggacgaatgtatagatactttacagcacaaaatacgttgagatatattgataatttgcaagattttgtcaactcatacaataatacatatcacagatcgattggtatgagaccttctgaagtcaaccaagacaatgttgACACTGTTcaaaaaagattgtttaaaaaagaaaccagaaaaaataaaaagcttttcaaaactggagattatgtaagattgagtttgaagaagagaatgtttaagaaaggttacttgcaaaattatactgaagaaatattcaagatcagtaaagtctttaaagaaagacatccagtaatgtatgaaattgaagatctacaaggtgaaaagatagttgatcgtttctataaagaagagctacagcgtgtgtatcttccaaaaacatttgttgttgagcaagtgttgaaaactaagaagaagaggggcaaaaacttctatttaatcagatggagaggctatccttcccaatttgatgagtgggtagctgaaagtcaattggagacaatatga

Transcript

evm.model.HiC_scaffold_29.845

Protein

Uniprot

Uniprot term	Description
P34457	Putative uncharacterized transposon-derived protein F54H12.3 OS=Caenorhabditis elegans OX=6239 GN=F54H12.3 PE=5 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00385	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan
IPR023780	Domain	Chromo domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46585	INTEGRASE CORE DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12646	RIGI, DDX58; ATP-dependent RNA helicase DDX58	EC:5.6.2.6	Pattern recognition receptors	ko04054	deepkoala