Gene detail

Detailed information of evm.model.HiC_scaffold_3.31 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_3:395628...404512
NR annotation: XP_020624779.1, probable ATP-dependent RNA helicase DDX4 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_3.31

ATGAGTGAAGACTGGGATGATGGAGATAAAAAAGCAAGCAACGTTGTTCAATTTCGGGTTTTCAAGACAACATCTCACCGAGGAGAGTCCTATGATTTAGGTGCCTCGTCACAAGGTCCTTCGTTCGTTGAAGATGCGAATGTCAGTTTGTATCGATGTCAACCATGTGGCAAGCATTTTAAGTCTAAAGCTGGATTGAAAATGCATGAAACGTGGTGTACAGTGGGGAAAAAAGACACCAGCGTAAGCTCTGAGGCAAAATTTCCAGCAGAAGATAGTAAAGATGTTATAGAGGTGGACAGTATTGAGGGTCAAGTTTCAATAACAGTTCGGGATTTGGTGTATAAATGCGTATCAGCAACAGAGAAGGAAATTGAGAAGAATAATCAAGAAAACGacgaaaaggaaaagaaagatgGTCGTAAAGGAGCAGAAAAAAGGCGCTCATATACCATCCAGTTTAAGTCAATGGTAGCTAATGAAGCAAAGCACAATCCAATAAGTGATGTTGCGTTAAAATACGGCATTGATAAATCAATGGAATTCACAAACGCCAGATCAAAGGGACTGAAGGTATCTTATGCCTGGCTTTACATACGTGCAAAGAAGATAATCCAGCAAGTCAGTCCTTCAAATCTCAACAAATTCCCAAAAGGTGCGATCAATATCTTCATAAGAAAGTACAGGATTAAACTCAGGAGAGTCCAACGCAAGAAGCAAATGGACAAAACAAGCTATTTACCCAGTATTCTGTGCTGGCACACAACATTGCTTGAAGGACTTATAAAGACAGGAAGTTCGAAACCTTCATATGATACGAAATGGGGGCGATACCGACCGAGTCGGCGGTTTAATCTGGATCAAGTGCCTATGCCATTCGCAGTTGACCGAAAAACTACATATGAAGCCTATATTTCCAAAGAGGAGCAAAGAGCTCACAGAACCTGGGTCAGCAACCCTGGACCAGGTCTGGAGAAAAGGCAATGCACTTTGCAGGTGTGCTTTTCACCCGAAGGACCACCTGTCAGAATTGCCATAATTTTTCGTGGGAAAGGGAAAAGGATATCTGCAGATGAAAAAAGAGCCTACCACAAGGATGTGGATGTCTATTGGCAGGCAAATGCCTGGGCTGATACAGAATTCAGTGTAAAATGGGTGGAGCAGACCCTCAAACCAGCCGTCAAAGACAGCGAAAATAGcgaatttttgttgttttgcgATAATCTAAGTGCTCAGACAGATGCATTATTTCTCAGTAAAGTGAAGGCATTAAATGGAATCGTTTGGTTTGGTGTGCCAGGTGCAACTGATATTTGGCAGCCTGTTGACTGTGGTTTTGGCAATATGCTAAAATCCATGGTAAGAACGGTGCAAGATGAATGGTTAGAAGATGACAGTAACATAGATCTATGGTTGGGAAACTCAGACCAGAAACTTGATGTGAAGCAAAGAAGGATTCTCATCACACACTGGGTCGGTGAAGCCTACAGTCGCTTGTTCGGAGAGCAGTATGCAGGCTCCCGACGGCGTTTCTTCGAAAAGACAGGCTGTCTTATAACTGCAGATGGTTTTGAAGACGAGAAAATTCAACCAGAAGGGCTACATTGGTATTCATTACCACCACCCTTACCGATGAATTCATCAGAAGAGCCTATGCAATGTCAACTTCCGGAACCAAGGCCAGCTCCTGAAGATGCTGAGGAATCAGAAGACAGTCTGCAGAGCGAGACCGAGGTTGAAGAGGAAAGAATTGATGAAGAGAATGATAGGGTTCTCCAGGATGAGCATGGGATGGGTGGATCTTCTACCACTTTCAATGGAACATCCAATGGTTTTGGTGGTGGCATAACGGGAGGAAGAGATGCAGATGATGCAGGCActggtggtggtggttttgGTGGAGGTGGTTTTGGTGGAGGTGGGGGTGGTTTtggtggaggtggtggtggctttggtggaggtggtggtggttttGGTGGAGGTGGAAGTGGTTCTGGTGGAGGTGGTTTTGGTGGAGGTGGTTTTGGTGGAGGTGGAGGGGGTGGAAGTTTTGGTGGGGGTAAAGCTTCAAGTGGATCTGGTTGCAGAAAATGTGGCGAAGAAGGTCACTTTGCCAGAGAATGCCCCAATAAAGGACCTGATACATGCAGAAAGTGTGGAGAAACGGGGCACTTTGCAAGAGACTGTCCAAGCTCTGGTGGAGGTGGTGGAGGTGGCAGTGGGTGCAGAAAGTGTGGTGAGGATGGGCATTTTGCAAGGGATTGCCCTAATAAGGGACCTGATACATGCAGAAAATGTGGGGAAAGTGGTCACTATGCAAGAGATTGTACAAGTTCAAATGGTACTGGGAGTGGAGGATTTGGAGGTGGTTTTGGAGGGGGTAGTGGAGGTGGTTTTGGAGGGGGTAGTGGAGGTGGTTTTGGAGGGGGAAGTGGAGGTGGTTTTGGAGGAGGCAGTAGTGGAGGTGGTTTTGGTGGAAATAGTGAAGGAGGTGAAAAGTCTGGAGGCTCTGGATGCCGTAAATGTGGAGAGGAGGGTCACTTTGCCAGAGACTGTCCAAACAAAGGCACTGAGACATGTAGAAAATGTGGAGAAGTTGGCCACTTTGCAAGAGAATGCCCAAATGCTGGAGAAGAgggtggtgaagaaaaacctgcaCCTGTCACTTATGTACCTCCAGAACcatcagaagaagaaaaggatgtTTTCAGAACGATTGCACAAGGTATAAATTTTGACAAGTATGATGAGATACCTGTGGAGGTCACTGGGCATGGACAAATGCCAAAGCCAATCAAGACATTTGAAGAAGCAAATATATATGAAGCTTTTTTAGAGAATGTAAAGAGGGCAAATTATGTGAAACCCACACCAGTTCAGAAGTATGCGATTCCTATTGTGTTGGCAGAGAGAGATCTAATGGCCTGTGCCCAAACTGGATCTGGCAAGACAGCCGCATTCTTATTGCCAGTTCTTACTAAAATGATGAACGATGGTCTTTCTGGCAGCAAGTTCAGTGAAATTCAGGCACCAGCTGCACTAATAATTTCCCCAACTCGAGAATTAACGTCTCAGATATACATGGAAGCAAGAAAGTTTTCACATCAGACGTCTTTAAGGCCGGTTGTTTGCTATGGTGGTGTCTCTGTGGCTCATCAGGCAAGACAGATTGAAAATGGATGTCACATGTTAGTTGCTACACCAGGAAGATTGAAAGACTTTGCAGAAAGGAAGAAGATCAGTCTACAGAGTGTGAAATATCTAATATTGGATGAGGCTGATCGAATGCTTGATATGGGATTTATGCCAGCTATCAAATCAATCATTGGTGACTTTGGAATGCCAGACAAAGAGAACAGACAAACTTTAATGTTTAGCGCTACATTCCCTGAAGAGATCCAAAATCTAGCTGCAGAGTTCTTGAATGATTATGTATTCTTAACAATTGGTAAGGTTGGAGGAACAAGCTCAAACATTGAACAGGTTATTGAGGATATTCCTGATTCTGAAAAAAGAGACAGGACTTGTAGAGATTCTAAGTAG

Transcript

evm.model.HiC_scaffold_3.31

Protein

Uniprot

Uniprot term	Description
Q91372	Probable ATP-dependent RNA helicase DDX4 OS=Xenopus laevis OX=8355 GN=ddx4 PE=2 SV=1
Q9NQI0	Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens OX=9606 GN=DDX4 PE=1 SV=2
Q6GWX0	Probable ATP-dependent RNA helicase DDX4 OS=Sus scrofa OX=9823 GN=DDX4 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF03184	DDE_1	DDE superfamily endonuclease	Family	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR004875	Domain	DDE superfamily endonuclease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0007276	Biological Process	gamete generation	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0043186	Cellular Component	P granule	Interproscan