Gene detail

Detailed information of evm.model.HiC_scaffold_30.124 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_30:1163855...1168768
NR annotation: MCP4485265.1, hypothetical protein [Flavobacteriaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_30.124

ATGGAGAACAATCTACCTCTGGTTAAAACAGCAGAAGAAGTACAGCAGGAGATTGCAGTCGAGTACAAAAAGAAACTGAATATTGAAGACGAGAACCTTCCAGATCCTTTCCAGCTTGAAGATGGTTGGCTAAATGAAGAAGATGGAGTCAGCTTCTGGCCAGCAACACTTTACCCTgacattttcaactttttatcttttcaCCCAAGTGAACTGAAAAGTGGCGACTTGAGTGATTACAAAACATCTAAGGCATACAGCTATTATTCAACTGGATGGCTGGATTCCATGTCTTATCATGCCATATCAGATGCAAGTaaattttgttttctaaaaACAACTTGTAGACCATCTCAAAGGATATCTGACACAACACACAAGGTCTGGGTTTGCATTGCAAAAGATACTGGCAAAGTAATGAAAGCTCACTACTCCTGCATGGCTGGTATCTCCCAAACATGTAATCATGTGGCTGCAGCACTTTTTCGACTTGAGGCAGCTGTAAGAATTGGACTGAATAGCCCTTCATGCACTTCGAAACCTTGTTCTTGGCTTCCAAACAACAAGAAGAAATTTGATCCAGCTGAGCATTTAGAAGACCCAATGTCTCTCCAAGAAATCCGCTCTACATTGAAGTCAATAACACATGATTCAATGGTTTATGCTACAGAGGTCAAAAAGGAAAAGGCAAGTGCATCATGTATGGAATCTGAAAATCTAATCTGCACATTAGATGATTACCTGCTAATATCAGAATCATCTGaagattttcttcttcataTGGAATATTTTCCTTCAAATGCAAACAAAATAGAGAAAGAAACAAGGGGACAAAGCATCAATCCATTGTGGTTTTCAGTTAGAAAGCACATGATAACAGCATCAAAAGCCCATGCTGTGAAAACCAGAATGGAAAGTGTGGACAAAGCAAGAGCTGAAAACCAATCAATTGAGTTAAGTGCAATATTTACAACAATTAGTGGCAACAGCAAAACTCTTGAATTACCTTCCCTAAAATATGGGAGGGCTATGGAACCTGAAGCGATTTCAGTATTTTTGAatgcttttaaagcaaaacaCAAACTTGTTTCTAAAACAGAATGTGAAATTATTATTTGTAAAGACAGACCTTTTATTGGAGGCAGCCCAGATCTAATTGTAGAGTGCAAGTGCTGTGGCAAATATTGCATTGAAGTAAAGTGTCCTTTTTCAATAAGAGACAAATCACCTCATGATGGTGCAAGCAAATTACCATATTTGGTTAGACACAGTGACACTGAGTTGTCTTTAAACAAGAAACATGCATACTTTACCCAATGTCATACCCAGATGGGTGTGACTGGAATTGACAAGTGTTTCTTTGTGGTATGGACCCCCCATGGACTGTTCatggagaaaatcatttttgatAATGGATATTGGGatcatttgaaagaaaaactaagTGACTTTTACCTTAGTTACTATGTTCCATCACTTTTTTCtcctgaaattactcatggtcttcagtcccaatccttagtcctcttcctcggtcctgaaattagtcatggtcttcagtcccattccttagtcctcttcctcaatcctgaaattacccatggtggtcagtcccgttccttagtcctcttcctcagttctgaaattactcatggtcttcagtcccaatccttagtcctcttcctcggTCTTAAAATtagtcatggtcttcagtcccattccttagtcctcttcctcaatcctgaaattacccatggtcgtcagtcctgttccttagtcctcttcctcaatcctgaaattactcatggtcttcagtcccattccttaggcctcttcctcaatcctgaaattacccatggtcttcagtcccgttccttagtcctcttcctcagtcctgaaattactcatggtcttcagtcccgttccttagtcctcttcctaaGTCcagaaattactcatggtcttcagtcccgttccttagtcctcttcctcagtcctgaaattactcatggtcttcagtctcatTCCTTAGTcttcttcctcagtcctgaaattactcatggtcttcagtcccattccttagtcctcttcctcagttctgaaattactcatggtcttcagtcgtGTTCTTTAGtactgttcctcagtcttgtcctTGTGGTAGTTGGTCTTTCTCAGTCCTGTTTAATACTGcttagtcagatactgctatccagccagctcaTACCTCAGGATGCCCTTTGGAAAGGTTTTTGTTTGCTTCTAAATGCACTCTcacaaacgttttcaaaagggtttttgctttgcttagaatga

Transcript

evm.model.HiC_scaffold_30.124

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09588	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019080	Domain	YqaJ viral recombinase	Interproscan
IPR011604	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47526	ATP-DEPENDENT DNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14590	CMTR2, FTSJD1, AFT; cap2 methyltransferase	EC:2.1.1.296	Messenger RNA biogenesis	ko03019	deepkoala