Gene detail

Detailed information of evm.model.HiC_scaffold_31.198 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_31:2559163...2565032
NR annotation: XP_002154232.1, tRNA (cytosine(72)-C(5))-methyltransferase NSUN6 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q7TS68	tRNA (cytosine(72)-C(5))-methyltransferase NSUN6 OS=Mus musculus OX=10090 GN=Nsun6 PE=2 SV=2
Q8TEA1	tRNA (cytosine(72)-C(5))-methyltransferase NSUN6 OS=Homo sapiens OX=9606 GN=NSUN6 PE=1 SV=1
Q84MA1	rRNA (cytosine-C(5))-methyltransferase NOP2C OS=Arabidopsis thaliana OX=3702 GN=NOP2C PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01189	Methyltr_RsmB-F	16S rRNA methyltransferase RsmB/F	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023267	Family	RNA (C5-cytosine) methyltransferase	Interproscan
IPR015947	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR049560	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic core	Interproscan
IPR001678	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type domain	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR036974	Homologous_superfamily	PUA domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22807	NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001510	Biological Process	RNA methylation	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21971	NSUN6; methyltransferase NSUN6	EC:2.1.1.-	Transfer RNA biogenesis	ko03016	deepkoala