Gene detail

Detailed information of evm.model.HiC_scaffold_31.211 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_31:2815924...2828187
NR annotation: XP_002169496.4, PAX3- and PAX7-binding protein 1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_31.211

atgctcaacatagctgaatcCGAATCACAAAAGCCAAAcagaggagagcctttggctatACGACGTGAAGATGTACGTGAGATATACCTGTTTATCCTAGCATCTGCTGTTGACACTGATGAATTTGGCCGTGATCGAGCAACTTATGAAGAGACAGCAAGACAAAGGAGGATCGCGGAACGAGAAGGACGACGAAAtagaagaaggaaaaacagaaCTAAAGATTCAGATCATCATGAAGGGCTTTCAAGTGATGATGAAGAATTGGATTCTGAAGTTGCTAGATTTAACGCTGATAAAGAGAGGATTCTGAGTCAAAGACCACCGATATTCGAAGATGTAGTATCGGATTTCTCAAGCGTTGATGAAATAAAATCAaggtttgaagaatggaaattcGGTTTCAATGACACTTATAAAGAGGCATACATCCATCTTTGCCTCCCAAAATTGTTCGCACCTTTTCTTCGCCTTGAAATGCTCGATTGGAACCCCTTACAGATTGACAATAAAGACTTTGAAGACATGGAGTGGTTTAATAGTTTGGCTATGTATGCTCACCACGCAGGTCAAGTCGCTGCagatgatgaagatgctaaaTTTATTCCTTATATAATAGAGAAAGTTGTCATACCAAGGCTAACAGAAATTGTTAAATTTGTCTGGGATCCTTTATCTCAAAAACAAACGAATCTTCTAACGATGCTGATGCAGAGATTAGGAGATGATTACCCAACTCTTCAAAGGCAGAGCAAAAACACTGAGGCGCTGATTTCTGAAATCATAAACAGAATAAAACACACAATTGACACTGAGATGTACATCCCTTTATATCCAAAAGGattgCTTCAAAATCGAAGCTCAGGAGCTTCAGCATTTTTAGAACGCCAGTTTTGGTCAGGATTCAAATTATTCAGAAATATCCTTTCTTGGAAGGGTGTGTTATCAATGAAAGTCATACAAGACCTCGGCCTAGACAGTGTTCTCAATCGTTACCTGATTGTGGCTCTCCAGCAGATGTCAAACTCTCAAGACTGTCTTGAAAAATGCAAAGAGGTCATAAGTATATTGCCAAAAAGTCTTCTCGATGGCACTGAAAACATCCCTCGAAACCTTCAACCATTTGCAAGATTTTTGAACAGTCTTGCAGGGAACATATTCAAGTCTTCACTTGGGTATtctgatattgaaaagaaaaaggcaaaTTCGCTGCAGGGGCAAGGCTTCACTGAAAGGCTAGCTGCAAGGGTTGATCTTCTTGTTCAAAGTGGAGTTATCACCCCAGAGGAACTCGACGATAGAGCCTTAGATGCATTGAAAGAATTCAGCGAGGATGATGCGATCCAAGTTATTGATCAATTCTCAAAAAGCGACTTGTCTCATGTCCAGAACAAAAGTGCGTTTCTCTGTGGTGTCATGAAGACTCACAGAACAAAAacgaagcaaaaagaaaagacTGGTGGAGAAGAAGCTCAAGGAAGAGCCGGTCCTAACGAAGATAAAGTCAAGGAGCTGCTAACTCGTACTGGTTACTCTTTAGACATTACAACTGGTCAAAGAAAATATGGCGGTCCGCCACCTGGTTGGGAAGGGCCAGCTCCAGGCCAAGGACCAAAGaaattttgctCTCAGGTTTTTGTTGGAAAACTTCCTCGTGACATGTTTGAAGATGAGCTTGTgccaatgtttgaaaaattcgGACAGATCTATGACTTCCGTCTTATGATCGATTCCTTCACTGGTTTGAATAAAGGTTATGGATTCGTCACTTTTGCAACAAAAGAGTCCGCACAACAAGCGGtcaaagaaatggacaaaaaGGAAGTAAGAGGTGGACGTAAACTTGGAGTTTGCTTGTCTTTGCCAAATGATCGGCTCTTTATTGGATCCATCCCAAAGTCAAAAACAAAGCAGCAGATCCAAGATGAGTTTGCAAAGGTCACCGAGGGTCTCATCGATGTTATTGTTTACATATCCTCAGAAGATAAAACAAAGAATAGGGATTTGCATTCTTACAATACGAAAGTCACAAAGCAGCTTCATTAG

Transcript

evm.model.HiC_scaffold_31.211

Protein

Uniprot

Gene family

Uniprot term	Description
Q9Y5B6	PAX3- and PAX7-binding protein 1 OS=Homo sapiens OX=9606 GN=PAXBP1 PE=1 SV=2
P58501	PAX3- and PAX7-binding protein 1 OS=Mus musculus OX=10090 GN=Paxbp1 PE=1 SV=3
O60506	Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens OX=9606 GN=SYNCRIP PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	GCFC

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18360	hnRNP_Q_AcD	Heterogeneous nuclear ribonucleoprotein Q acidic domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF07842	GCFC	GC-rich sequence DNA-binding factor-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041337	Domain	Heterogeneous nuclear ribonucleoprotein Q acidic domain	Interproscan
IPR012890	Family	Intron Large complex component GCFC2-like	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR022783	Domain	GCF, C-terminal	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12214	GC-RICH SEQUENCE DNA-BINDING FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17925	SNX13; sorting nexin-13	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala