Gene detail

Detailed information of evm.model.HiC_scaffold_31.225 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_31:3002632...3010065
NR annotation: XP_037259711.1, E3 ubiquitin-protein ligase RNF220 isoform X3 [Falco rusticolus]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q5VTB9	E3 ubiquitin-protein ligase RNF220 OS=Homo sapiens OX=9606 GN=RNF220 PE=1 SV=1
Q8HXD5	E3 ubiquitin-protein ligase RNF220 OS=Macaca fascicularis OX=9541 GN=RNF220 PE=2 SV=1
Q6PDX6	E3 ubiquitin-protein ligase Rnf220 OS=Mus musculus OX=10090 GN=Rnf220 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15926	RNF220	E3 ubiquitin-protein ligase RNF220	Family	Interproscan
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031824	Domain	E3 ubiquitin-protein ligase RNF220, middle domain	Interproscan
IPR040178	Domain	E3 ubiquitin-protein ligase RNF220, RING finger	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR052443	Family	E3 ubiquitin-protein ligase RNF220-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13459	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25174	RNF220; E3 ubiquitin-protein ligase RNF220	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala