Detailed information of evm.model.HiC_scaffold_31.363 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_31:4409665...4425985
NR annotation: XP_047146048.1, lysine-specific demethylase 4A isoform X4 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8BW72Lysine-specific demethylase 4A OS=Mus musculus OX=10090 GN=Kdm4a PE=1 SV=3
Q8VCD7Lysine-specific demethylase 4C OS=Mus musculus OX=10090 GN=Kdm4c PE=1 SV=1
O75164Lysine-specific demethylase 4A OS=Homo sapiens OX=9606 GN=KDM4A PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18104Tudor_2Jumonji domain-containing protein 2A Tudor domainDomainInterproscan
PF13831PHD_2PHD-fingerFamilyInterproscan
PF13832zf-HC5HC2H_2PHD-zinc-finger like domainDomainInterproscan
PF02373JmjCJmjC domain, hydroxylaseDomainInterproscan
PF02375JmjNjmjN domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003347DomainJmjC domainInterproscan
IPR003349DomainJmjN domainInterproscan
IPR002999DomainTudor domainInterproscan
IPR040477DomainLysine-specific demethylase 4-like, Tudor domainInterproscan
IPR034732DomainExtended PHD (ePHD) domainInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10694LYSINE-SPECIFIC DEMETHYLASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000785Cellular ComponentchromatinInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0032452Molecular Functionhistone demethylase activityInterproscan
GO:0032454Molecular Functionhistone H3K9 demethylase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06709KDM4, JMJD2, JHDM3; [histone H3]-trimethyl-L-lysine9/36 demethylaseEC:1.14.11.66
EC:1.14.11.69
Chromosome and associated proteinsko03036deepkoala

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