Gene detail

Detailed information of evm.model.HiC_scaffold_31.717 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_31:8488023...8517214
NR annotation: XP_031567987.1, non-specific lipid-transfer protein-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_31.717

ATGGTCGACATCCTGTCAAGAAGAGGGCGCCAGCCCCTCCGAAGAGAAGCATGCACCGTTCGCCTCTGCCCCGTCCGAGCTTGTATCACCACAGGCTATAACAGCACGTACCGAAGTACCCGCCTACCTTCCTGGATGCCTTTTCGCCCAGACAGAGCAGCTGTTGACGCGCTCCGACGAGAAGTGCGACGAACACAAAAAAGCTTgaggggtggattccaccccccgTTTGAAAAGCCGGGAAAGAGAGACAATTTTGACTACCCTCAAATGGCAGTTGAAGCAGgAACTGCAGCACTCAAAGATGCAGGTATTCACTACAAGGACATCGAGCAAGCTGTTGTTGGTTATGTTTATGGGGAATCAACATGTGGCCAGAGAGCATTGTATGAGCTTGGATTAACTGGAATTCCCATATACAATGTAAACAACAACTGTGCCACTGGATCATCTGCTTTGCATCTGGGGAAACAGTTGATAGAAGGAGGTGTAACAGACTGTGTTCTAGCTATTGGCTTTGAGAAAATGGAGAAGGGTTCCCTGGGTCTTAAGTATAACGATAGAACTATTCCCCTGGACAAGCACATCGAGTTAATGGGAAGCCTAAGAGAATTCAGTGCCTCGCCAATGACttgccagatttttggcaaTGCTGGAAAAGAGCATATGGATAAGTATGGTACAAAAAAAGagcattttgcaaaaattgctGAGAAGAATCACAGACACTCTGTCAATAACAAGCTTTCACAATTCACTAAAGATTACACTTTGGAGGAAGTGATGAACTCACCACAGATACACGACCCACTTACCAAACTCCAATGCTGTCCAACTTCAGATGGTGGAGCTGCAGCAATACTATGCAGTGAACGATTCGTGAAGGAGAGAGGATTAGAGAACAATGCAGTGGAAATCTTAGCGATGGAGATGGCAACCGATCTATCAAGCACATTTGAAGATAAAAGCTGTATTAAATTGGTAATTATTATGACTGGAACAGCTTTCCAAAAGGCTGgACTGAAACCAGCCGATGTTGACGTGGTTGAACTGCATGATTGTTTTTCTGTCAATGAACTCATCACGTACGAAGCTCTTGGATTGTGTGAAGAAGGAAAAGGAGGAGAGCTTGTCGATAGAGGAGACAACACATATGGagggaaatatgttgttaatCCAAGTGGTGGACTTATATCAAAAGGGCATCCACTGGGAGCAACAGGCTTGGCTCAATGCACAGAACTTTGCAATCAGTTGAGAGGTAGATGCGAGAAAAGGCAAGTTCCTGGAGCCAAGATTGCACTCCAGCACAACTTGGGACTTGGTGGCGCATGCGTTGTTGGTATCTACAAGCTTGGTTTCCCGAATCAAAGCTTGAAGTCTCGATTGAGACTAACATCAATGTCTGGCTCACTTGAAACGAAATTCAAGTCTTATGCTGTTTTTGAAGAGATAAAGAACAGAATGGAAAAGGAGGGGGAAAAATTGATAAAACAATTCAAAGCTATCTACTGCTTCAAACTTAGCAAAGGTCCTGAAGGGAAGACTGGAACTTGGTACGTTGATGTGAAAAATGGGAAAGGCTCAGTGATGTTTGGAGAACAAGATATAAAGCCGGATGTGACGTTTAAAATGGCTGATGAAGATTGTCTGAAATTGATGACTGGAGCGCTGAATCCACAAATGGTTCTAAACCAAGACCTTACTGGATTCAATTTACCAGATGTTTCTGAAATAGCTGAGAAAAACAGTGAGGAAGAGCTTGCTAAAATGCTTCAGCTTGTTCTTGGCTGCGCTGTGAATTGTGAGGATAAAGAACAATATATCCAGGTAATCATGGGACTAGATGAGGAAGTTCAACATGATGTTATGAATGCTATTCAAGagCTGCTTGCTGCTAAAGACACCTCGCGATCATCAGAACCAGAATATTCAAGAGATTACGATAACCGGCATAAAGAGACAGTCCAACAAGTTACAATGTTGATGATGGAAAAAGAAGAATTATTACAGAAAATTCATGACCTTGATGACCAGCTGCAACTTGTGAAAGAAGAAAAGTCGACGCTTCTTCTTGAAAACGACCAACTCAGATCTCTCCGCAAATCTGTTCGCGATCAGGATCAAGAAGACGGGAATGCTGGTATCATTGGTAAATTATCGAATCAGATTGACAAactgaaagaagaaaatttcaatttggaAAATGCCAAAGAAGATTACCGAATCCGCTTCGAGCAGCGAGACAAAGAGAACAGTTTACTAAATGACAAGATCGAGCAGCTATCAACACTTGCAGAAGAAGCTCGCTCATTAAAAGATGAAATGGATGTGCTAAGACATACTCAAGACAAAGTTGCAAAGTATGAAGCTACCATAGATACATATAAGAAAAAACTGGAGGAACTACAGGACATGCGGAAGCAAATGAAATCACTGCAAGAAAAAAACAATGGCTACATGCAACAAACCATATCAATGGAAGAGGAATTGAAAAAAGCTCAGAGCTGGAAAACTCAAATAGAGACATTTAAAAAGCAGCTATATGAGCAGCAGTCAAAAAATCTGGATTTAGAAAAACGAAACGACAAAGCAGAATTTGAATCAAAGAGGGCGAAAGAAAAGCTACAGATGTTGGAAGCAGAGAACGAAaGGCTGAAATTAGAAAGAAATACTCTTCGGGAAACGAATGAAGAATTGACGCTTAATTCATCAAAACAACCTGGTTTATTGCCAGCATTCGAAGATGGAAATAGTCCTACTAATTCAATTTCAGAAGATATGCTGCAAATGGatgattctatttcaccagaaataaAgaGCAAATTCATTCGATTGAAACACGAGAATAAAATGCTGAAATTACAGATGGagggaaatgaaaatgaaaaaatccaAGTTCTTCAAAGTATGTTAGATGATATGAAGGAACAGAAGAATGAAATGGAAACTGAGAATAGACAGCAACATCAGAAAATATTAGAACTTCAAGGAGAATTAGAAGATGctctgaaagaaaaacaagatgaCGTCCAAAAATCATCTCAAGAAGAACAAGATTTGAAGAAGAAGCTTCATTTGCATTTAGAACAGCTAAGAGAAGCAAGTCAAGAGTTACAACGAAAGAAAAGTTATATTGACGATCTggaatcaaaatcaaatagcAATTCTGATGAAATCCTGAGTCTACGAGAAAAACTCATGAAGAAGGATGAAGACATGAGGCAAATGGAAGATAGATACAAGAAGTATTTAGATAAAGCCAAACAGGTCATCAGAACTCTAGATCCAAAACAGAACACCCATGCCGAGGTACAGCAGTTACGGAACCAGTtacaagacaaagaaaaaatgaTAGAGCACTTGGAGAGAGATCATGAACGCATGAAGACAACACGAGAACGAGAAGAAAAGCTAATCATTAGTGCATGGTATGAAATGAGTATGCGACTGCATCGTAAAGCAGCAGAAGAAAGATTGGCTGGTAGTTCTGGATTATCATTTCTTGCACGTCAAAGGCAAGCTGCATCATCTAGACGTGGGACACCTCAGAAAGCCATGAAAACAGCTATTAATGCTACGTATGTCGATTAA

Transcript

evm.model.HiC_scaffold_31.717

Protein

Uniprot

Uniprot term	Description
O62742	Sterol carrier protein 2 OS=Oryctolagus cuniculus OX=9986 GN=SCP2 PE=1 SV=1
P32020	Sterol carrier protein 2 OS=Mus musculus OX=10090 GN=Scp2 PE=1 SV=3
P22307	Sterol carrier protein 2 OS=Homo sapiens OX=9606 GN=SCP2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19047	HOOK_N	HOOK domain	Domain	Interproscan
PF00108	Thiolase_N	Thiolase, N-terminal domain	Domain	Interproscan
PF02036	SCP2	SCP-2 sterol transfer family	Domain	Interproscan
PF02803	Thiolase_C	Thiolase, C-terminal domain	Domain	Interproscan
PF05622	HOOK	HOOK protein coiled-coil region	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036527	Homologous_superfamily	SCP2 sterol-binding domain superfamily	Interproscan
IPR016039	Homologous_superfamily	Thiolase-like	Interproscan
IPR043936	Domain	HOOK, N-terminal	Interproscan
IPR020615	Active_site	Thiolase, acyl-enzyme intermediate active site	Interproscan
IPR020613	Conserved_site	Thiolase, conserved site	Interproscan
IPR020616	Domain	Thiolase, N-terminal	Interproscan
IPR003033	Domain	SCP2 sterol-binding domain	Interproscan
IPR020617	Domain	Thiolase, C-terminal	Interproscan
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR008636	Domain	Hook, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42870	ACETYL-COA C-ACETYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016746	Molecular Function	acyltransferase activity	Interproscan
GO:0030705	Biological Process	cytoskeleton-dependent intracellular transport	Interproscan
GO:0016747	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0031122	Biological Process	cytoplasmic microtubule organization	Interproscan