Gene detail

Detailed information of evm.model.HiC_scaffold_317.24 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_317:338275...363028
NR annotation: XP_009059548.1, hypothetical protein LOTGIDRAFT_192663 [Lottia gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_317.24

ATGGATGCTTCAAAAGCAGTGGAAAATGGCCATCAAGGTTTGGTGGATGTTGATCAATTTATTGGATACATTGGTGAATTTGGAAAGAAGCAGATAATCCTACAGATAATGTTTTGTCTTATGGTTATGCCAGCAACTTTTCAGACATTACTGCTCACTTTCGCTGCAAATAACCCAGCATGGATTTGCACTGGTTTAAACGCGGAATGCAACAAAACTGGGGTTTCTTTTGGTATTTCTCATGATTATTATGATCACAGATGTAAACTACTAAATCGCAGCTCTTGGCAATTTGTAGAACCAAAAGGGTTCTCCATTGTCACTGAGtGGGATTTGGTTTGTGACAAGAAAGAGCTTTCATATCTTGCTAATTCAGCTTATTTTCTTGGAGCAGCTGTTGGAATTTTATTCACCGGATTTTTGTCAGACAGATTTATCCCTGAATCGGTAAGATGGCTTCGTGTAAATGACAGAGTGGATGAGGCTGAAGATATTctaagaaaaacagcaaaaatgaaTGGAAATCCACCACCTCCTGTTAAATTATCTCATGTAGTCAAAGAAACAGCTCATGGAacatttattgatttatttcgACCATTGAACATGTGCAAAATTACACTGATACAATGTTTTCTATTTTTCGTAAATGGCATGGTTTATTATGGGCTCTCATTTGCATCCGATGATTTGGGTGGAAATATGTATCGAGATTTCATTCTTTCAAGTTTGGTTGAATTTCCAGCAAACACACTTGTAATCGTATTTGCCAACAGTTACGGCAGAAGAAAGACAACAATCTTCTCCATGGCTTTGTCAGCACTGTGCTGTGGCATTCTTACAGGCATTCCAAACAATCAGCAAATTTCAGGATACATGTGGTCAAGAGTATGTTTTGGATTGCTGGGTAAATTCTTTATTACTATATCCATTGCTGCAGTTCTAGTATGGTCAGCGGAAATCATTCCAACTGTTGTCCGGTCCCAAGGCCTGGGTGTGCTGACTTGTTTTCTAAACTTTGGATCTTCAATCGCACCTTGGGTTGCCCAATTTTTAAGGCATTTCCATCCTTCAATTTCATTTGCTGTAATGGGAGGGTTATCAATGGCGTCTGCTGGACTTTGTTTCATCCTGATGGAAACTAATGGATTGGAAACCAACGAGATTGGCAGAAACCCAAGTGCTATTGGCACAATCTTGGTTAACAAAGGTGGAAGACACGTCTTAGGGCCTGGTGGAGTATTCTCATTTCTACAGGGAAAACACAGATGTAGCATTCAGTTTATTGACTCTTCTCAAATACCTTTAACACACAATTCATCAGAAATTAAAGATGTTAACGTCAAAGGATGCAGAGTATCATCATTGCTGAAAGGCTTGAAATCGACAAAGTCATTATCAGACTTAAAAGCTAATGCAGAAACAGAAAGTCAATTAGATACAGATATTGAAATGGCAGGAAGTTTTAGTGCTGATCGAACTTCAAGGAAgcgaaaaagtgaagaaaaagatgaaaataaagctAGCTCGTTAAAGAAATTAAGACGCTCCCTAACAGGTCATTTAACGGATTGTTTTTCACCAACAGAAAGAAGGAAATACAATGTTGAGGATTGGCAGTATAAGTTTGCTGAGAATATTAGCAAGGAAGCAGAAGAACCTTCCACCAAAAGTAATCAGGcattaaatgaaaacaataatagTGAACAAAACATAGAGGCTGTGCAGCAACAACGATTCAAGCAAAGCATATCTGAATATATGGAGAATAAATGGGTAACTAAAGATGGACTAATGGTTTTTTGTTGTAAAGGAGTAGATGCCAGAGAGAAGATTGCTGGTTTTGATCTTGATGGAACTTTAATAACAACTATATCTGGCAAAGTTTTTCCAACAGGACCTGATGACTGGAAGCTGTTATTTGGAAATATAAGAAGCAAATTGAAGCAAATCTACGATGATGGGTATAAAATCATCATTTTTACTAACCAAAAAGGACTTGGAAAATGGAAAGTATCTGTTGAAGGGTTTAAAGAAAGAATTGAGAAAATACAAGCACGTCTTGGATTGCCTATCCAGTGTTTCGTTGCAACAAAAACAGATCGTTACAGAAAACCGGTCACTGGAATGTGGGAATCTTTGGTATCAGATTACAACAATGGCGAGCATATCGATATGAACAATTCATTCTATGTTGGAGATGCTGCTGGGCGACCCGTTGGCTGGACGAAAGGAAAGAAGAAGGATTTCTCGTGTGCAGATCGCTGTTTTGCAGCTAATTTGGGGTTAACATTTCATACACCAGAAGAATTCTTTCTCAAATGGAATAAAGCGACTTTCTCATGGCCAGAGTTTGACCCAAGAAAGATACCACGATCACCTCCACTGTTGCATTCTAACTGCTCGTCAGCTGAACTTTTGAGCAGTTCTCAAGAGGTTATACTGATGGTTGGTTACCCTGCATGTGGAAAAACGACTTTCGCAAAGAAATATTTCGTTGCACACGGCTACGAGCATATTAATCGCGATACGTTAACAACATGGCAAAAATGTGTTGCATCATGCCAGGCTGCTTTGAGTAAAGGCAGGAGTGTGGTAGTTGATAATACTAACCCAGACAGTAAAACACGCAAAAGATATATTGATGTAGCAATACAGAAAAGTGTCCCAGTTAGATGTTTCCTGATGGCAACAACACTAGATCATTCAAGATTTAATAACAAGGTCAGTAACACATTAAACAAATCAATAAAGTCTTTAAATCAACTAGCATGCAAACTACCAAACAGTTTTATAAGTATATTATGTTGA

Transcript

evm.model.HiC_scaffold_317.24

Protein

Uniprot

Uniprot term	Description
Q96T60	Bifunctional polynucleotide phosphatase/kinase OS=Homo sapiens OX=9606 GN=PNKP PE=1 SV=1
Q9JLV6	Bifunctional polynucleotide phosphatase/kinase OS=Mus musculus OX=10090 GN=Pnkp PE=1 SV=2
Q19683	Uncharacterized protein F21D5.5 OS=Caenorhabditis elegans OX=6239 GN=F21D5.5 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08645	PNK3P	Polynucleotide kinase 3 phosphatase	Family	Interproscan
PF00083	Sugar_tr	Sugar (and other) transporter	Family	Interproscan
PF13671	AAA_33	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR006549	Domain	HAD-superfamily hydrolase,subfamily IIIA	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013954	Family	Polynucleotide kinase 3 phosphatase	Interproscan
IPR006551	Domain	Polynucleotide 3'-phosphatase	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR005828	Family	Major facilitator, sugar transporter-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12083	BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0046403	Molecular Function	polynucleotide 3'-phosphatase activity	Interproscan
GO:0046404	Molecular Function	ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity	Interproscan
GO:0046939	Biological Process	obsolete nucleotide phosphorylation	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan