Detailed information of evm.model.HiC_scaffold_32.36 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_32:516825...561216
NR annotation: XP_017352867.1, lymphoid-specific helicase [Cebus imitator]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9NRZ9Lymphoid-specific helicase OS=Homo sapiens OX=9606 GN=HELLS PE=1 SV=1
Q60848Lymphocyte-specific helicase OS=Mus musculus OX=10090 GN=Hells PE=1 SV=2
Q9XFH4ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana OX=3702 GN=DDM1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07986TBCCTubulin binding cofactor CDomainInterproscan
PF00176SNF2-rel_domSNF2-related domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016098Homologous_superfamilyCyclase-associated protein CAP/septum formation inhibitor MinC, C-terminalInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR012945DomainTubulin binding cofactor C-like domainInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR000330DomainSNF2, N-terminalInterproscan
IPR017901DomainC-CAP/cofactor C-like domainInterproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan
IPR036223Homologous_superfamilyAdenylate cyclase-associated CAP, C-terminal superfamilyInterproscan
IPR006599DomainCARP motifInterproscan
IPR038718Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47161LYMPHOID-SPECIFIC HELICASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005721Cellular Componentpericentric heterochromatinInterproscan
GO:0006306Biological Processobsolete DNA methylationInterproscan
GO:0006346Biological ProcessDNA methylation-dependent constitutive heterochromatin formationInterproscan
GO:0010216Biological Processobsolete negative regulation of gene expression via chromosomal DNA cytosine methylationInterproscan
GO:0031508Biological Processpericentric heterochromatin formationInterproscan
GO:0046651Biological Processlymphocyte proliferationInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19001HELLS, DDM1; ATP-dependent DNA helicase-Chromosome and associated proteinsko03036deepkoala

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