Gene detail

Detailed information of evm.model.HiC_scaffold_336.13 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_336:128259...168538
NR annotation: XP_020895336.1, 2-oxoglutarate dehydrogenase-like, mitochondrial [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_336.13

ATGTGGCATTATTTTGTTGCTCATGTTGCTTTCTTTATGACGAGATGTTTTCCTAAAGACAATCGGCGTCCAGTccgtcttttttgcttctttgGTGCATTGGTGTTTCTGGTACCACAGTTTGTTGTGCTCACTTTGAAAGAGAGTGAAAGATATTGCAAGAATCCTCTTTTAGATATGCTTGTTGTAACCATAGGAACAACCTTTGCCATGATGGCTTTCACATTCTTATTCACAATGATGGAACCAGTGCCATGGAAACTGAGATTGGCATTCCATTTCTTTGGTGCATTTTCATGCTTAATTGGTATCCTGCAGTTCTCGTATGCTGCTAGTGCTACAGAATGTTCTCAGACAACGCCACAGCTCTATTACCTATCAATCTCATTTGGCATCTTTGGACTACTAACCGCAGTGTTCTTCATATGCATGCTGCCATTTTGGGTGATTGAGTTCTTTTGGGAGGGAACAGTGCTAAACAGACAAGAACGAAGGGATAGTAAAGGACAACCTAAGGTTGCAGAGTCGTTCAGTTTACCTCAAGAAAATCAGAAGAAAGTCCAATCACCGTGCTTTGCGTTGCCATTGCTCATTGTGAACTGGGCCGAGAAATTAGATGTGACGTCATTTTCAACGGCCACTGGATCAAGTGTTTCTTGCGCCAGAAATCAGTTTGCTAGTTCGTCGAATGGCGAAGACATATGTGTAGACTGCTTTTGCAATGAGCTGAACGTACGCTGTAGACGCTCCATGTATTTCAGCTCACTGATTCAACTAAAAGATGACGTCACGAAGATCAAAGTAACTGATGGTAATTCACTGATAACAAACGGCCTCTATTTCAACTCTGATCACGAGGTCATTCTAGGAAACGTTCCTCAGCTGGAGAGTTCTTCCTTGTACTGGCTTCTTCCGAATAAATTTCTTGGAAATCAGATTCTATCGTATGGTGGCGTTTTATCTTATTCCATCTTTTATGATGTGTGGTCAACTACAGAGCCATACTTGGGGAATGATATCAAAATAAAGGGAAAGAACGGAGTTACCCTTTATTATTATAGCAACATGAAAATCAAACCAAAAGTTACTCAGAGAGTCAAGATACAGATCGTTGAGGGAAAGCTGACCCGGGAGAATGGCAGTCCAGCTGATAGGAATTCAATAATGAAAGTCTTAATGAATATCCAGAGTATATCGATACGAGCTGCATATTCACCGGATACAAAGCTAACTATgccaaatttgccagtatttcggcagatttttgtggccggtaccagggccaaaatcgatttgactgttgagattcaaggaaattcgatttggggcctggggacgagTGGCCCTGTTTCAAGCCAAAAAACCCTCTGCTCTTCGACAAACactgacgctactgtggcttcgtggcctaatccagctggctatcggtgtcagaagctcagcaaagtCGGAGTTCgtgccccagctacgACATGCCAGCGAGGTTATACAAGATCTTCTGTCTCTGATAACAAGGCAAAGTGTGTTCGATGTCAATGTAATCGTCATACTCTTGAATGTGATCCTGAAACTGGAGTCTGTCAGAATTGCAAGCACAATACATTTGGTGATAACTGTGAGAAGTGCATGCCGGGATACTATGGAAATGCTCAGATTGGCACAACAGGGGATTGTCAGAGATGTTCATGCCCTCTTAGTATTCCCTCGAATCACCATCGCCATCACGTGCTTGCTGATCAAGTGAATGACAAAGTAAAAGTCACCCCCCTGAACAGTTTATACCCCAACCAGGCTCCATATCATGTATGTAACAGTTCTCTTTCAGAATACGCTGTGCTGGGCTTTGAGCTTGGCTACAGCATGACTAATCCATATTCACTTGTGCTATGGGAAGCACAGTTTGGAGATTTCATGAACACTGCACAGtGCATCATTGACCAGTTTATTAGCAGCGGTCAGGACAAATGGTCTCGTCAAAGCGGTATTGTCTTGCTATTGCCACATGGATACGAGGGAATGgGTCCAGAACATTCAAGTGCAAGATTAGAACGTTTCTTGCAATCATGCAATGATGACTCTGATGTTTTCCCTGATTTTAGTGAATCTGAATTTGAACTGAAACAGTTATACAACTGTAATTGGCAGATCGTCAACTGCACAACCCCTGCAAACTATTTCCACGTGTTGAGAAGACAGATGAGCATGGACTTCAGAAAACCGCTTATCATCTTCTCACCAAAGAGCTTGTTGAGGGCCAAAGTTGCTCGATCTGATCTCAGTGAAATGGCTGAAGGAACATCATTCACTAGAATGTATCCAGAAAATGGCCCGGCTGCTACAAATGgagaaaatgtaaagaaattgttGTTTTGCACTGGAAAGATATACTATGAAATCTTCAAGGAGCGCGAGGACTCTGGCCTTCAAGAAGACATTGCGATCGCACGTGTTGAGCAGATCTCTCCATTCCCATTGGATTTGGTGAAAGAAGAAGCTGCCAAATATCCGAATGCTATAATCCAATGGGTACAAGAAGAACCGAAGAATATGGGATCCTGGTTCTATGTTCAACCGAGAATCCACACTGCAACTGATAACACCCGAGATGTCCGAAATGGTGTTGCCCTTGGCGTTGTTGATGGTGTTGGTAATTTAagtaatgttgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatggttgtgtTGATGGTGAtcgtagtgatgatgatgatgatggtaatgttgatggtgatcgtagtgatggtggtgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgattga

Transcript

evm.model.HiC_scaffold_336.13

Protein

Uniprot

Uniprot term	Description
Q60597	2-oxoglutarate dehydrogenase complex component E1 OS=Mus musculus OX=10090 GN=Ogdh PE=1 SV=3
Q02218	2-oxoglutarate dehydrogenase complex component E1 OS=Homo sapiens OX=9606 GN=OGDH PE=1 SV=3
Q148N0	2-oxoglutarate dehydrogenase complex component E1 OS=Bos taurus OX=9913 GN=OGDH PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16870	OxoGdeHyase_C	2-oxoglutarate dehydrogenase C-terminal	Family	Interproscan
PF00052	Laminin_B	Laminin B (Domain IV)	Domain	Interproscan
PF00053	Laminin_EGF	Laminin EGF domain	Domain	Interproscan
PF02779	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031717	Domain	Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal	Interproscan
IPR002049	Domain	Laminin-type EGF domain	Interproscan
IPR005475	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR011603	Family	2-oxoglutarate dehydrogenase E1 component	Interproscan
IPR000034	Domain	Laminin IV	Interproscan
IPR029061	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR042179	Homologous_superfamily	Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23152	2-OXOGLUTARATE DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004591	Molecular Function	oxoglutarate dehydrogenase (succinyl-transferring) activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0016624	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	Interproscan
GO:0030976	Molecular Function	thiamine pyrophosphate binding	Interproscan
GO:0045252	Cellular Component	oxoglutarate dehydrogenase complex	Interproscan