Gene detail

Detailed information of evm.model.HiC_scaffold_344.1 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_344:3414...6271
NR annotation: XP_012557203.1, uncharacterized protein LOC105844767 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_344.1

ATGTACCCGTACAACAGAGCACTGAATCGAAGTCTTAGACGAACTAAAAAGAACAAACAAACGGACTCTGAAACTTCAAGCAATATGTCTGGATCAGATATTGCAGTTGAAATGGAATCTGAAATTATTTGGGATCCTTCTGAGTATAAATTGACATATTTATTAGATAATTTCAAATTGCCTCAAATCGTTCGTGTTATCGAAGGCTTTATGTTATCTGAGGATGATAGTTTGGCGAGTGGGACTGTGCTGACGATTCATGGACAGCAGACATTCGAACAGATTTGTGGCCAAGAAGCTCACGGACTAGGCAGGGATATTAATATTCATCTTAACTGTCCGTATAAAGTCAAAATTTCAGTACCAAATAAAGATCATGTTTACCGGACTATCAAAGATCTGTGCAATGCTTCACCGCTTCCAAAATGTGTAATCGTACAAAAGAAGATTTCAGTGTCCGGTCAAAATATTCAAGCAGGAAGATGCCTAATTGTTAATACAATAACGCGGAATCATGCTGACGAGGCTTTTGGATTATTGGTATCTAACGCTGATAATGAACTCAATAGCTTTGTTTTGCCTCTGAAAGTCGAAGGGAATTTCAGACCATGTCCTTCTCCAAGAGACCAGGCCCGGAGTTATTTTATTAGGGAATTGTCAGAACGGCCTATGCCAATCTGGGTTGAGTTTGTGCAGTCTGCAGAAAAGAACGCACCGTATGGACCTCATCTTGGGGTaataaaattattcaaaatctCCACGTCTCATGTTGTTTATGCTACTAGTGTTATTGACGGTGAAAAATACGCCATTTCGTTCTCACGTGATCTGCCAGTGACTATTGAAGTAGCGAGAGGAATGCTGGATAATACAGCAACTTACGTTCGCAGGCTGAAGGTAGCAAAAGAACAAGTTGATATGGATGTGCTTAGTCATTTGACTGAATCCAGCCCGTATCGTATTGAAGAATACAGAAGCTCTGCTTATGATGATGTCAAAGCATTGAGAGAAGCtttaaaaatgaaagaattggTTAATATGTCATCGTACTCAACCGATAGTAAATCTGCAGCGTCATCTGAGATGTCTTATGGAGAGGATTCCAGGTCGCTACAAGATGGTTACATAACGACTTATAGGTCGTCTGACGTTCCCTCGATAAACAATGGTTCAATGGGTTCCCGGAATTCTCAAGGACGAGAAACTGTATCGTGTTCGTCAGCAGAGAATCTTTCACTGTCCTCGCTTGATAGCAGGGAAATTCCTGCCAAAACTGACGAGACAACTGCTCCAGCATACAATACGAATGATGTCGTCTTGAATCAAACAGAGACGACCCAAGACGACTTTGATAGTGAAGACGAGGGCTATGAGAAGGTTGCTGACTGGATGGATCGACCTGCGTTTCGAAGTATCAAGCAGAAAGAAACACTTGGTTCCGATTTACCAACTGATGGGTTCTTCTCTGTACTTGATAAGTCGGATGGTATATCCGTCAAATCGGATGAGATGTCAGTTATATCAGATTATCAGTCAGTCAGATCAGAGCAAGACTCCGACTCTATTTCTGTGAAattcactgaagaagatgaagcaaTTTATGGCAACCTTCACGAGAAACTTCTTTCTATTTCAATTAATACAGAGGCATCAACTATGAAAGCGGATAAGACTGATCTGATCAAACCTGAAGTACCGAAGAGACCTCCAAGGGTACCCCCTACACCTTTACCTCGACAAAGGAAAATGTCTGGTAGGAAATCCAGTAATTCAGGCAGCTTTGAAAGCGAAACAATTACTTCTAAGCAGAATAGCGTGAGTGATTTTGTTGAGGAGAATAATAACGCTATAGCTTCTAGTGAAGCTCAGCCCGGTAGCTTAGAAGTATTTGAGCCTGTCTTTGAAGAACCTAGTCAGGTTCAAGTTGAATATGAAAATACTCCGTTTAGAGATTCTGGAAAGACAAACGCTAGCGACAACGCTGGtgacaatgacgatgataatCGCGTGGCACGAAAAGCAACTGTTGTAAACTCAGACCTAAAGGCTGCTGAAGAAGTTGCGAAAATGTCCGAAATTCACCATGAACGCGAAGAAGATACAATTTCAAACAGAGATATCATAGATGAGACCGAAGAAGGCGTCTGCATTATATTAGATAAATTAAATCTTTCTGATTTCAAAGAAGTTTTTAAGGAGAATCAGATAAACGGACAACTGCTTGCTGAAATAGACGAAAATGAATTTGTTACTGACATTGGACTGACGTTATTCCAAGCAAGGAAACTCAGGCTATACATTCAAGGCTGGAGAGTATCTGAAAACGAGGCTTCGGGTGATAACGATCCTGGGAGCTGGTCAGTGAAGGATGTTGCTACAATGATGGAATCGATAAACTTGAAAAGTTTGGCTGTTTTTTGCGCTGAAAATAAAGTAGATGGAAAGTTATTGGAAGAATTGTTAGACGAAAGACTTTTGCAGTGTTTGAGAGAATCTTATAATGTCAAACTTAGTAGTTTTGAGGAGAAGAAACTAAAACGATTTGTAAAAGGGGGATGGAGACCCGATAGCTCAATTAAAAGGTAG

Transcript

evm.model.HiC_scaffold_344.1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12736	CABIT	Cell-cycle sustaining, positive selection,	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR025946	Domain	CABIT domain	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR052281	Family	GRB2-associated and regulator of MAPK	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14454	GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10864	PMS1; DNA mismatch repair protein PMS1	-	DNA repair and recombination proteins	ko03400	deepkoala