Gene detail

Detailed information of evm.model.HiC_scaffold_35.184 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_35:1843833...1846561
NR annotation: XP_028397220.1, uncharacterized protein LOC114521030 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_35.184

ATGTCCAGCGTTTCAAACGTCGAATTTCCTCGCAGTTTATTCAGTGATAATGAGCTCCAACTGAAAAACATCGAAAGCATTGAAATTCACGGCTTTTCGGATGCCAGTCAAATTGCGTATGGCGCTTATTCACAGGTTGTCCTGTGCTGGATTCATAACGAGTGTAAAAAACAAACGCAATTCGTTGAAAATCGCCTCACACGCATACGTACTTCGACAAGAAAAGAGGATTGGGGTTATTGTCCTTCAGCTTTAAACCCAGCAGATTTGATTTCTCGAGGAACTGCGTGTTCTAAAATTCAGAATAATCGATTGTGGTGGGAAGGACCCTCTTTTCTGCTAGAACCAAACGAAAATTGGCCGAAGTTTGATTGTTCATTCAACAAACAagatacaaatttcaaaaacgaaGTTATCGAACAAAGCTTACTCGTTACGACAAATTCCGACGAAGTAAGGCTTCctgaaataataaaatgtacAGATTACAGCAAGTTGGATAAGCTCCTGCGCATTACTGCTCTTGTTCTTAAATTTATTCGACTACTAAAACGTAAGAAATCAAAGGCCAAATCGAACATGCTTATTTCTAACGAGGAACTAAACGAAGCCAAAATACTGTGGTATAAGGAAGTTCAAAGCTCAATAGCTAATGATCCGAAGTTTCGCGATACAGAATCGAACCTAAACGTCTTCACCGACGAAAATGACATATTACGCGTGAAGGGACGAATTGACAATGCACCCCTGTCATATGATACAAAGTATCCAGTTCTTTTACCAAGGCGTCATTATTTTACTTACCTAGCCATTTTCAAATCACACAATGAAGTGAAGCATAATGGCGTGGCCGAAACCTTAACTCAATTAAGATCAGAGTATTGGGTCACTAAAGGACGTCAAGTCGTGAAAACACTTCTAAACAAATGCTCAGTCTGTAAAAGAATCATGGGAAAATCGTATAATACGCCAGAAATGCCACCGTTACCGCCCTTCAGAGTCTCTGAAGAACTCGCATTCATGCAAATCGCAGTGGATTTCGCCGGTCCACTTTATGTAAAAAACATATATACCGAATCTGAAACGAGCTTCAAATGCTATATCGCGTTATTTACCTGCGCAAGTACTCGTGCAATTCACCTCGAATTAGTCCCAGATTTAAACGGTTCTTTGTTTATTCGTGCATTACAACGCTTCATTGGGCGACGAGGATTGCCTACATTCATTATATCAGACAACggtaaaacattcatcgatcgcaCAGTTCAACGCTTTGTAAATAGTAAAGGTATTATCTTGAAATTTAATATCGCAACTGCTAGTTGGTATGGAGGCTTCTTTGAATCACTTGTCAAACTCACCAAACGCTGCTTACGCAAAACGTTAGGAAACGCTCGCCTAACATACGAAGAACTCGAAACAGCTCTGATCGAAACCGAAGGGATTCTGAATTCAAGACCGTTAACTTTTGTTTACGGAGACATATCGCAACCGCCGTTAACGCCTTCTTGTTTAGTCATTGGACGTCGTATTTTAGATAAATCGTCAGTATCAGAGAACGTTGAAAATTCGTGTCATGAATCCTTAACTCGTAGAGCTAAATACATCGAATCGCTATTGTCGCAATTCTTCAATCGTTGGAAGAAGGAATATTTACCGTCGTTACGAGAACATTATCGCTCAAAGAAACAACATAGAATGCGTATCGCTCAAGTCGGAGATATATTATCATCCAGCCCTCGCGAAATACAACATAATCCGTTCCTGAAAACGTGCTTAAGagaatcgaccaaaatcgaccaGGCTATAACTAAAATAGGGatcgggaatgggaacgggaatgggaacgggaatgggaacaggaattggaatgggaacgggaacgggaacgggaacgggaacgggaatgggaacaggaatgggaacgggaacgggaatgttATTGATTGCAATATTTCAGTTTTAGATGAGCGTAAAAAGATATTTACATAG

Transcript

evm.model.HiC_scaffold_35.184

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05380	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR008042	Family	Retrotransposon, Pao	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955	RETROTRANSPOSON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23209	THAP9; DNA transposase THAP9	EC:2.7.7.-	Chromosome and associated proteins	ko03036	deepkoala