Gene detail

Detailed information of evm.model.HiC_scaffold_37.200 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_37:1365141...1371295
NR annotation: MCP4484998.1, hypothetical protein [Flavobacteriaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.HiC_scaffold_37.200

atgccaacaataaagaaactaggtgtaaaagctgctgagaaaattttgaaacctgttttagaagaagaaggagagaaggcagttgatcggatattagctagtgagaatgttggagaagttgtaaaagatactgccaaatcttcaATGAGAGGAAtaaaaaggaaggctactgatgAAATCGCCGATGtggtgaagaaatctgtcaagaaatcgcctgctggtaagaaatcgcctgctggtaagaaatcgcctgctggcaagaaatcgcctgctggtaagaaatcaagagttattgaaaaagcAGACGACCTAGAAAACCGGAGTCGTAGGAATAACATTAAAGTTTTCGGCATTCCCGAAGAGTCTTCCGAAGACTACGCTGCTTCAGAGGTGAAACTGAAAGCTGCAATTGCTGATAAATTAGGAATAAAGGATGAAATTGTCATTGAACGAGCACACAGGGTAGGGCCTAAAGATGGAGGAAGAAAAACACGTGATGGCACCAGAAGAAAGAATCCGGATGAGCCAAGACCGATTGTAGCGAAGCTTCTAAACTGGAAGCAGAAAGATGCTATAATCCAAGCAGCAAGAAAGAGTCGGCCACATGGAGTTTCCTTCAGAGATGATTTCTCAGACAGAGTGTTGGCAAAAAGGGCATCACTCATTCCAGACATGTTAGCAGCCAGAAAAGAGGGGAAACAAGCATTCCTTGTGAGAGATCGATTGGTGATAAAGAAGCTGAGTAAACCACCCGACGATGCTGCAACTGCAAAACTGAATGATCAAGAAAGAATTTCTAGCAACATAAGTGACAATGAAGTTTTATTAAAGAATGAACTTAAAttaGTTTCAAATATAATCTTCCTTTTCGTCACAAATTTAAATAGCTATGGCCAGCAGAATAGcgattatgatattgatgagcaGATGCCTCAAACTCTTGATTCTCGTTATTTCACACTGCCAGAGCTTTCATCCTTGCACTATTCTTCATCAGATCTTTCTGTTCTGCACACTAATATACGAAGCCTTTCTTGCCATCATGAGGAATTGATAGCATTATGCAATCAACTTACTTTCCATCCTGATGTAATTGgtgtttctgaaatttgggaTAGTGATAACCATCCCATTACAACTAATGTTGACATTCCAGctattaaaagagtcgatggaagtaatattggaaaaaccactgcagaatttgctggagtaataagtaatattggccaatccatgtggaagcagatagagctggttttgaatgacactcccgtcacagaagcaaatggaatcaaatacttgctgcctggtgttcgtcttcaatggcgattgagtccaaacattgatgtgttttgtttgatgagaaagactggaaacatttcacgtctgtacatttccgaagtgaaactggtgcttcgccacatacatcttaaagatgatgtattgaaaggaattgaaagaacactgatgaaaacgaatgcggtttacccagtctgtcaacctcacatggcaagctacttaatcaatgctgcaacaaccaactgggttcaagataatgtgttcaatggaaagattccaaacagattgttttttgcgttggttgataattcatcattcaatggagcggatgaaggaaatccgtttgagtttgaacatgtttctgtttctgccattcaagtggctgttgacaatcaagaaattactccacctctaagattgaattatgatgatgatgattactttgatgcctacagccgcttggtgaccagctttaataattcacctagtctaattgattatgatagattcaaacaaggatcggcaatctatggttttgatttgacacctaaaggaaactgtgcagatgagcaatatttgcttaaaagagagggtaatgtGAGAATCAgcataaattttgcaaacgctgttgacagtttgatgaacattgtaattttcggtgaatttgatagagtcattcaaattgatagtcataaaaatatcattcgagattggtaa

Transcript

evm.model.HiC_scaffold_37.200

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR004244	Family	Transposase, L1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11505	L1 TRANSPOSABLE ELEMENT-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003727	Molecular Function	single-stranded RNA binding	Interproscan
GO:0032197	Biological Process	retrotransposition	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan