Gene detail

Detailed information of evm.model.contig_10174.5 in Platygyra sinensis

Genomic Location: contig_10174:45333...62752
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_10174.5

ATGACTGACAACGAACTGTTTCCTGTGCTTCAGTCTGCCTATAGGAAAGGGCACAGCACGGAAACAGCACTACTGAGAGTTACAAATGATATTTTGTCCAGCATGAATAAGCAACACGTGTCAATTCTTGTGTTGCTCGACCTGAGTGCGGCGTTCGACACTGTTGACCATGCCATTCTGTTACGCCGACTCGAGACCTCATTTGGCATTACGGAAGCTGCTCTCGCATGGTTCTCATCGTATTTATCTGGACGTGGTCAGTACGTGTCGGTGAATGGAGAGACATCGGATTGTTATCCCTTGCCATTTGGTGTTCCTCAGGGTTCTTGTCTCGGGCCCCTACTCTTCAGTGCCTATGCCAGCAAGCTATTCGAGGTCATCAAGCTGTACCTGCCCAACGCACATGCATTCGCTGACGATACCCAGCTTTATCTTTCTTTCAATCCAGACAACTCCCTTAATGAAGCAGAGGCACTACATTCTATGGAACAGTGTATTCGCGCCATAAGGGCGTGGATGCAAGTTGACAAACTGAAACTTAATGAGAACAAAACTGAGGTCATGTTGATCGGAACCCGCCAACAACTTAGCAAAGTCAAACTGCGTATGCTGACTGTTGGTGATACTAGTGTTGCTATTGTAAACACAGCGAGAAATCTCGGAGTTTGTCGGATGAGAAATCAAATTGCTGCACATGCGCAGAAGGGTGTCAAATGCTCTTTAATCGTTTCGGTTACTTCTACCTTTGGATCTGTGATCAAGGCAAAGAATCCAACTAAAGAGGAACTTGAGGCCCTTTTGAAGCGATCGCATGGGCCGAAGAGCTTGAGGGACCAAGACAGCGAAATGCCCAAGATCAAAGCCGTTGCTGATCAACCAGAGGAAGCAGACATTATTCCTGGTTATGAACTTACATCTGCAAGGCTGAAAGAGTTTCTTTATAGCCTCCCCAGCGCGATCTGCAAAGTCGCCATTGGCATTGACAACGAAAGTCGCGATACATGGACCAAATTCCCCACCTATTTCCATTCTGGCACTGAGGATAAACCATTGCCTTATCATCTTGAAGACGAGTCAGCCGTGTTGTATGGAGCTCTCCGTGCTGAAGGATCAGAAGAACCCGCAGCCATTGGAGTCCTCGCCTACTACATTCCAAGCATCGGCAAAACACTTGGTGTGATGTGGTCTAATCCTTATTCTGACTCAAATACGTGGAATATTCGTCTGTACGATGGACAAAAACTGCCCGACTCTGATATGTTAGATGATCTGCGCGACCATGGTGCTATGGGGGCAGGTATTCTAGAGATGATTAAGTGGTTTAAATATTCTAAAGTGTACAAGTCACAAACACGCAATACCAGGGTATCATACCACCATAAGCAGCTTGAAGTCGCTTGGCGTGTGACAGAAGCCAAAACACGCGTAGGGATGCCAGCCCCTGTCATTGTGACGTCACAATCATTACGCACTAAATACTTGCGGACGTTCTGTAATGAAACGTCACCATTACCCAACGATTCCATGCGGACGTTCAGTGATGAAACGTCATCATTACCCAACGATTCCATGCGGCCCCCGTTTGAGCAAATCGAGATTTTATCTGGTATACAAACTGTATATTCTAACTCGATGTCTGGGGGAACTCCACGAAATGGACGGTCAACCTCTGGAAATATGAAAAAAACGAGAAAAACAGAGACCTTCGTAACGGAGAACGAAATAGTCGGCGCTCGTGGAAATACGAAACCGCGAATTTCGCCCTCTGTTATCGAGCATGGATTTCATACCGATAAATACAAAACTCATTACAGTACTTGGACACCAGTAGTGAACAGTGCTTCAAACAGTAAGATCTTCGTGGAACGTTTAGATCTGATCGGACACTGGTTCTCTCTGTGGACAGATGCCCAACGAAAGAAATTCCTCACCTTCATCCTGAAGAAATGCACAAAGTCGCAACTAAAATTCGTAAATGAAGGCTGGTTCAAGAAGCAGCTTCCAATTCACCACTTAGATTATACAACTGTTTTGCCTCGATTTATTTCTACATACATCTTTTCTTTTCTGGATCCAAGAAGTCTTTGCCGGGCAGCTCAAGTGTCTTGGCAATGGAAGTTTATAAGTGAGCAAGATGTCATCTGGATGCCGAAATGCATACAATTTGGTTGGTATTTGCCATACACACCAAGTAGCAGAGAATATGGATGCTGGAAACATCACTACATCATGTGTGCTGGTTCACTTGATATGGAAGCTCCATCCAGAATGGCAGAGAAGTATGGTCAGTTTGCTGACAGCACATCTGCAAGAGTGTCCACACAAGAAAGAGAGAAGCAAAAAGGTGTTGAAAAGAGACGAACTAGGGAGATTAAATACTACAGACAAGAAACACGTCGCCCACCTTGGTTGGACACAGATCCGCAGCCCCATGACTTAGAGAATGCAAGCAAGGCTTTATTTTATGAACATAATCCCAACCAGCCTCATTCCCCTGACCAACTGAGAGCTGAGAGACTAGGACTGAGTACCAGACCTCCACACAGAAGGTCACATACTGCTCCTGCACACATGGGCATGGAGAAAGTGGATAAAATCGAGAAAATTTGTGACGTCAATGGAAACATTATTGAGGAGGGGAAAGAACCTGTACATCCATCAAAGCTGACCTTGACAGAGGCATTAGCTGTTGAATCTGGAATTGACGAATCGGTGGCGGAACGGTCGTGGGCCACACCTGCCCCAAGGTCACCTGTGCGACGGTAG

Transcript

evm.model.contig_10174.5

ATGACTGACAACGAACTGTTTCCTGTGCTTCAGTCTGCCTATAGGAAAGGGCACAGCACGGAAACAGCACTACTGAGAGTTACAAATGATATTTTGTCCAGCATGAATAAGCAACACGTGTCAATTCTTGTGTTGCTCGACCTGAGTGCGGCGTTCGACACTGTTGACCATGCCATTCTGTTACGCCGACTCGAGACCTCATTTGGCATTACGGAAGCTGCTCTCGCATGGTTCTCATCGTATTTATCTGGACGTGGTCAGTACGTGTCGGTGAATGGAGAGACATCGGATTGTTATCCCTTGCCATTTGGTGTTCCTCAGGGTTCTTGTCTCGGGCCCCTACTCTTCAGTGCCTATGCCAGCAAGCTATTCGAGGTCATCAAGCTGTACCTGCCCAACGCACATGCATTCGCTGACGATACccagctttatctttctttcaatCCAGACAACTCCCTTAATGAAGCAGAGGCACTACATTCTATGGAACAGTGTATTCGCGCCATAAGGGCGTGGATGCAAGTTGACAAACTGAAACTTAATGAGAACAAAACTGAGGTCATGTTGATCGGAACCCGCCAACAACTTAGCAAAGTCAAACTGCGTATGCTGACTGTTGGTGATACTAGTGTTGCTATTGTAAACACAGCGAGAAATCTCGGAGTTTGtcggatgagaaatcaaattgctgcacatgcgcagaagggtgtcaaatgctcTTTAATCGTTTCGGTTACTTCTACCTTTGGATCTGTGATCAAGGCAAAGAATCCAACTAAAGAGGAACTTGAGGCCCTTTTGAAGCGATCGCATGGGCCGAAGAGCTTGAGGGACCAAGACAGCGAAATGCCCAAGATCAAAGCCGttGCTGATCAACCAGAGGAAGCAGACATTATTCCTGGTTATGAACTTACATCTGCAAGGCTGAAAGAGTTTCTTTATAGCCTCCCCAGCGCGATCTGCAAAGTCGCCATTGGCATTGACAACGAAAGTCGCGATACATGGACCAAATTCCCCACCTATTTCCATTCTGGCACTGAGGATAAACCATTGCCTTATCATCTTGAAGACGAGTCAGCCGTGTTGTATGGAGCTCTCCGTGCTGAAGGATCAGAAGAACCCGCAGCCATTGGAGTCCTCGCCTACTACATTCCAAGCATCGGCAAAACACTTGGTGTGATGTGGTCTAATCCTTATTCTGACTCAAATACGTGGAATATTCGTCTGTACGATGGACAAAAACTGCCCGACTCTGATATGTTAGATGATCTGCGCGACCATGGTGCTATGGGGGCAGgtATTCTAGAGATGATTAAGTGGTTTAAATATTCTAAAGTGTACAAGTCACAAACACGCAATACCAGggtatcataCCACCATAAGCAGCTTGAAGTCGCTTGGCGTGTGACAGAAGCCAAAACACGCGTAGGGATGCCAGCCCCTGTCAttgtgacgtcacaatcattacGCACTAAATACTTGCGGACGTTCTGTAATGAAACGTCACCATTACCCAACGATTCCATGCGGACGTTCAGTGATGAAACGTCATCATTACCCAACGATTCCATGCGGCCCCCGTTTGAGCAAATCGAGATTTTATCTGGTATACAAACTGTATATTCTAACTCGATGTCTGGGGGAACTCCACGAAATGGACGGTCAACCTctggaaatatgaaaaaaacgAGAAAAACAGAGACCTTCGTAACGGAGAACGAAATAGTCGGCGCTCGTGGAAATACGAAACCGCGAATTTCGCCCTCTGTTATCGAGCATGGATTTCATACCGATAAATACAAAACTCATTACAGTACTTGGACACCAGTAGTGAACAGTGCTTCAAACAGTAAGATCTTCGTGGAACGTTTAGATCTGATCGGACACTGGTTCTCTCTGTGGACAGATGCCCAACGAAAGAAATTCCTCACCTTCATCCTGAAGAAATGCACAAAGTCGcaactaaaattcgtaaatgAAGGCTGGTTCAAGAAGCAGCTTCCAATTCACCACTTAGATTATACAACTGTTTTGCCTCGATTtatttctacatacatcttttCTTTTCTGGATCCAAGAAGTCTTTGCCGGGCAGCTCAAGTGTCTTGGCAATGGAAGTTTATAAGTGAGCAAGATGTCATCTGGATGCCGAAATGCATACAATTTGGTTGGTATTTGCCATACACACCAAGTAGCAGAGAATATGGATGCTGGAAACATCACTACATCATGTGTGCTGGTTCACTTGATATGGAAGCTCCATCCAGAATGGCAGAGAAGTATGGTCAGTTTGCTGACAGCACATCTGCAAGAGTGTCCACACAAGAAAGAGAGAAGcaaaaaggtgttgaaaagaGACGAACTAGGGAGATTAAATACTACAGACAAGAAACACGTCGCCCACCTTGGTTGGACACAGATCCGCAGCCCCATGACTTAGAGAATGCAAGCAAGGCTTTATTTTATGAACATAATCCCAACCAGCCTCATTCCCCTGACCAACTGAGAGCTGAGAGACTAGGACTGAGTACCAGACCTCCACACAGAAGGTCACATACTGCTCCTGCACACATGGGCATGGAGAAAGTGGATAAAATCGAGAAAATTTGTGACGTCAATGGAAACATTATTGAGGAGGGGAAAGAACCTGTACATCCATCAAAGCTGACCTTGACAGAGGCATTAGCTGTTGAATCTGGAATTGACGAATCGGTGGCGGAACGGTCGTGGGCCACACCTGCCCCAAGGTCACCTGTGCGACGGTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF06369 all species →	Anemone_cytotox	Sea anemone cytotoxic protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR052805 all species →	Family	GEF and Ubiquitin-Proteasome Regulators	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR009104 all species →	Family	Sea anemone actinoporin-like	Interproscan
IPR015926 all species →	Homologous_superfamily	Cytolysin/lectin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46857 all species →	EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0015267 all species →	Molecular Function	channel activity	Interproscan
GO:0046930 all species →	Cellular Component	pore complex	Interproscan
GO:0046931 all species →	Biological Process	pore complex assembly	Interproscan
GO:0051715 all species →	Biological Process	cytolysis in another organism	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_10174.5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.