Gene detail

Detailed information of evm.model.contig_11264.5 in Platygyra sinensis

Genomic Location: contig_11264:18996...45307
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_11264.5

ATGTGTCTGTATCTGATGGAGGCATCCAGTCACATGACAGAGTATTACAGCTACTGCGGCAAATCTGTGGTGGAACACTTGCAGCAAGTACAGGACTATCTATGGTCACATTTTGTACCTGGAGATTTGCTTCCTGGTAATTTCTCAGCAGAGGCTGGGAGGCTGGGGAGTTATCATCCTTCCTGGGAGGGAAAAATCTGTGTACAAAGTCTTCCAGTTTACAATCTGAATTCTGTTGAAATTACAGACAGTGGTACTGTGAAGAAGATAACAGGGTGGGCATTTGTTGGTGGAGCAAAGCCATTAAGGAAATCAGCCAGCAACGTGGATAAAGAAGAAAGAGACGAATCACAGACTATAGGAAAGTCGAAAACCACTGTTTGTAAATTCTTTATTGCATTCAAATTAAAGGTCCTTCAGGTCGAAGAGTTAAAAAAGGAACTGGCGACAGAAAGAGCTCAGGTTCAGCAACTGTTGAAATTGAACAAGGCACTTGAAAACGAACTACTTCGAACTCAAAACATCTTATCAGAAGAACGTGCGCGGGCTCAAAGCGTCAGAATTGCCTGTAGAGAAAGTAAAGATAGGGCTGCCAAACTTCAAAAAGTTGCAAGCGAGGACAAGGAGTCTATAGATGAGTTACTGAAGACTCTACGAAAAGAACTCGAAGAAAGGAATAATTTACGCCGCCTTCTGGAAGAGGAATGCCTCAAACATACTCAATTGGTGGAATCTTCTGCTAAGAGTGGAATGGATCAAAACGAGAAGAAGGCTAAAACTTCAGAGGTGAAAGAGAGCAAGATGCGCCATGAACAAGATAAAAAAGAAACCATTACCCGAGCCGTAAAGTTATCTTGTGGTGCTGTATTAACTTTAAATGAGATGACTGCACCAATGTACACCGTAAATCAACCTAAATCAGCCATGGAAACTGAAGAACTCAAAATGGAGTTGGGTGAAGCGAACAAATCGTTCATAGAAAATGAAGTAGAAGTCCACTTGGCGAGTGCCACTGGCCAAAGCAAAGAGGAAGATGGGAACGAGGAGCAGCCTGAAACGGCACCAGAATGGGTAGCTGTCACCTATTCAAAGTTGAGATACTACGCCCGCGTAGTAACTGAGAGAGCTGAGACCATGGATGTCCAGTTCCTCTTTCCCAGAGGAAACGATATATATGCGTTCAAAAAAAGTCGGACGACAGAAACGATAGAAAATAGGCAGGTTTTTACCAGAAACCTAAAGCTAACAATAAAAGGAGAAGGGTACTCAGTGATGGGCGAAAAAGAAGTCGAGAGCTTGTGGGATTTTGATCACCAAAGGGACCTGAATAAGGTAATTTGCGCGATGCAAATGGGCAAGGTTGCCATTGGTGATTTTAAAACGATCCAACCTTGCATGGATACTGCGGACCGACAACTGATGAATGCACATATGGGCAAGACGTTTTCTGTTGGTTGGCTTAACGACGAGGTAATGAATGTAAGCCTCGAAATTATATCCTCGGATCACGAACGGGATGTCAACATACGTGCCATACCAAGCTTTGTGATCAACAAAGTACGGAAGACGACTCCTGTGCAGCTCAAAAGCTGGAGCTGGGTCAAGAACACCAAAGTCACTCAACATGACATTCTGCTTGTTGCTGTCAACCCGCTCAATCACTGGACCTTAGGGGGCATGGGAAAGTTTTTTTTTCCTCCAAAAGGGGACGATTATTTCACACATTACCATCTCAGAAAGCTTCTTATGATCTGCGATGTCGAGGTTGATTCGTGGGCTCAGGCAGAGGAAGCCGCCCCTCAGCAGAAAGACTGTAGTAGCTGTGGAGTCTTTGCTTTAAAGATAGCCCAATGTATCGCCAAAGGAAGAAAACTCACTTTCACGCAGGACGACATCAAGCACATACGCTACGAGGTAGCTTATAAAATTATTGAAGCTGGAAAGAGTGGGAGTAAATATAGAAAAGCGTTGGATGAAATGCAGGGGTCGGAGGGGTTGTCGCAAAATGATGAATACGGATTCAGAACCAAAGCCGACAAAAGACAGAGCAAGTACCAGATGGCCCCAGCATATCTGGGAAAGCGAATTAAGGGAGTAGAAAGTGGCTTGAGATTGATTTATTCGGAGGAGGAACTGGACTTTCTCGAGGGCGAATTCGCCAAAAACCAGTTTCCAAGCAGAGAAATGCGAGAAGCATATGCGCAACGCTTGGGTGTTGACGAGAAAGCTATGAAGATTGCTCAAATAATGGCAAAAGAGGCACATCAAATCTTAAAGCATCATTTTCCACAAGTACCAGTGGACATAAACAGCCAGAGAAACAGAGAAAGCAGAAGTGAAGGAACAGGACAGGGGCTGATGCCTCTTGCAGAAATGTCCCCTGGTGTTGTATTAACAGGGACAGGAATGTGGGAAAAAGCAAGTGGAAAATCATCTATAAAGATGCCACGCCTTACAAGTCAGGCAAAGGCTGCAATGCTTGCTGTAGAGACCTCTACAGAGGTAAAGTTTAATGTCATCTCCAAAACAGCAAAGAATGTAGTGGTGGAATGCGAGGGTCTGGGACTTGTCAATGAAGAGGTTCTACCAGAGGATAATAGCCCTTATGTGTGA

Transcript

evm.model.contig_11264.5

ATGTGTCTGTATCTGATGGAGGCATCCAGTCACATGACAGAGTATTACAGCTACTGCGGCAAATCTGTGGTGGAACACTTGCAGCAAGTACAGGACTATCTATGGTCACATTTTGTACCTGGAGATTTGCTTCCTGGTAATTTCTCAGCAGAGGCTGGGAGGCTGGGgAGTTATCATCCTTCCTGGGAGGGAAAAATCTGTGTACAAAGTCTTCCAGTTTACAATCTGAATTCTGTTGAAATTACAGACAGTGGTACTGTGAAGAAGATAACAGGGTGGGCATTTGTTGGTGGAGCAAAGCCATTAAGGAAATCAGCCAGCAACGTGGATAAAGAAGAAAGAGACGAATCACAGACTATAGGAAAGTCGAAAACCACTGTTTGTAAATTCTTTATTGCATTCAAATTAAAGGTCCTTCAGGTCGAAGAGTTAAAAAAGGAACTGGCGACAGAAAGAGCTCAGGTTCAGCAACTGTTGAAATTGaacaaGGCACTTGAAAACGAACTACTTCGAACTCAAAACATCTTATCAGAAGAACGTGCGCGGGCTCAAAGCGTCAGAATTGCCTGTAGAGAAAGTAAAGATAGGGCTgccaaacttcaaaaagttgcaAGCGAGGACAAGGAGTCTATAGATGAGTTACTGAAGACTCTACGAAAAGAACTCGAAGAAAGGAATAATTTACGCCGCCTTCTGGAAGAGGAATGCCTCAAACATACTCAATTGGTGGAATCTTCTGCTAAGagTGGAATGGATCAAAACGAGAAGAAGGCTAAAACTTCAGAGGTGAAAGAGAGCAAGATGCGCCATGAACAAGATAAAAAAGAAACCATTACCCGAGCCGTAAAGTTATCTTGTGGTGCTGTATTAACTTTAAATGAGATGACTGCACCAATGTACACCGTAAATCAACCTAAATCAGCCATGGAAACTGAAGAACTCAAAATGGAGTTGGGTGAAGCGAACAAATCGTTCATAGAAAATGAAGTAGAAGTCCACTTGGCGAGTGCCACTGGCCAAAGCAAAGAGGAAGATGGGAACGAGGAGCAGCCTGAAACGGCACCAGAATGGGTAGCTGTCACCTATTCAAAGTTGAGATACTACGCCCGCGTAGTAACTGAGAGAGCTGAGACCATGGATGTCCAGTTCCTCTTTCCCAGAGGAAACGATATATATGCGTTCAAAAAAAGTCGGACGACAGAAACGATAGAAAATAGGCAGGTTTTTACCAGAAACCTAAAGCTAACAATAAAAGGAGAAGGGTACTCAGTGATGGGCGAAAAAGAAGTCGAGAGCTTGTGGGATTTTGATCACCAAAGGGACCTGAATAAGGTAATTTGCGCGATGCAAATGGGCAAGGTTGCCATTGGTGATTTTAAAACGATCCAACCTTGCATGGATACTGCGGACCGACAACTGATGAATGCACATATGGGCAAGACGTTTTCTGTTGGTTGGCTTAACGACGAGGTAATGAATGTAAGCCTCGAAATTATATCCTCGGATCACGAACGGGATGTCAACATACGTGCCATACCAAGCTTTGTGATCAACAAAGTACGGAAGACGACTCCTGTGCAGCTCAAAAGCTGGAGCTGGGTCAAGAACACCAAAGTCACTCAACATGACATTCTGCTTGTTGCTGTCAACCCGCTCAATCACTGGACCTTAGGGGGCatgggaaagtttttttttcctccaaaaGGGGACGATTATTTCACACATTACCATCTCAGAAAGCTTCTTATGATCTGCGATGTCGAGGTTGATTCGTGGGCTCAGGCAGAGGAAGCCGCCCCTCAGCAGAAAGACTGTAGTAGCTGTGGAGTCTTTGCTTTAAAGATAGCCCAATGTATCGCCAAAGGAAGAAAACTCACTTTcacgcagGACGACATCAAGCACATACGCTACGAGGTAGCTTATAAAATTATTGAAGCTGGAAAGAGTGGGAGTAAATATAGAAAAGCGTTGGATGAAATGCAGGGGTCGGAGGGGTTGTCGCAAAATGATGAATACGGATTCAGAACCAAAGCCGACAAAAGACAGAGCAAGTACCAGATGGCCCCAGCATATCTGGGAAAGCGAATTAAGGGAGTAGAAAGTGGCTTGAGATTGATTTATTCGGAGGAGGAACTGGACTTTCTCGAGGGCGAATTCGCCAAAAACCAGTTTCCAAGCAGAGAAATGCGAGAAGCATATGCGCAACGCTTGGGTGTTGACGAGAAAGCTATGAAGATTGCTCAAATAATGGCAAAAGAGGCACATCAAATCTTAAAGCATCATTTTCCACAAGTACCAGTGGACATAAACAGCCAGAGAAACAGAGAAAGCAGAAGTGAAGGAACAGGACAGGGGCTGATGCCTCTTGCAGAAATGTCCCCTGGTGTTGTATTAACAGGGACAGGAATGTGGGAAAAAGCAAGTGGAAAATCATCTATAAAGATGCCACGCCTTACAAGTCAGGCAAAGGCTGCAATGCTTGCTGTAGAGACCTCTACAGAGGTAAAGTTTAATGTCATCTCCAAAACAGCAAAGAATGTAGTGGTGGAATGCGAGGGTCTGGGACTTGTCAATGAAGAGGTTCTACCAGAGGATAATAGCCCTTATGTGTGA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	DUB\|ULP\|ULP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF05189 all species →	RTC_insert	RNA 3'-terminal phosphate cyclase (RTC), insert domain	Domain	Interproscan
PF02902 all species →	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR003653 all species →	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR013791 all species →	Domain	RNA 3'-terminal phosphate cyclase, insert domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12606 all species →	SENTRIN/SUMO-SPECIFIC PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016926 all species →	Biological Process	protein desumoylation	Interproscan
GO:0016929 all species →	Molecular Function	deSUMOylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_11264.5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.