Gene detail

Detailed information of evm.model.contig_11785.6 in Platygyra sinensis

Genomic Location: contig_11785:72570...87370
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_11785.6

ATGGCATTTTCCAGGACTGGAAAGACAGAAGGTTATTGTTGCACAGGAAACTTAACAGGCTGGACCAAGTGCACATTTGTCACAAAGCAGCCCAAGCGAGATACCTGGGTAATTTCTGAAGAGCTGAAGGAAGAGTCAGACTTTTTGAAGAACTTCAAGTTCAAGAAGAGAGAGAGGATATTTCCAAAAGTGCCTGATGTGCCTGTTCCATCATCTAAAGCAGTAATCAAATCTGAAGCTGTTACGTCAATGGCTTCTCCAGTTTCTGCTACGCCTGGCAAGCCACTTTCTGACATGAAATTTGCAGTCATTGGGAGGCTTCAACAGAGCAAGGAGAAAACTACCAGAGCCATACAAGATCTGGGAGGATCAGTAGTTGAGAAAATAAATGCTGTTGTTGACTGCTGTATTAGTACGCTAGCTGAAATAGACAAGAAAGGCAAGAAAATGAGAGATGCTGAAAAGTTTGATGTTCCAGTTGTCAGTGAAGATTACTTGGAGGCTGTGAAGAAGGGTGGAGCCAGACTGATGATTTCACAGCATAGTATTGCATCATGGGGAAATACGAAGGGTACCAGTGTGACAGATGGTCCCTCCCCTCCCACTGTGACCAAGGTCAAGAAAAGAGCTTCAGATGGAGGAAGTGGACTGGCAAAGAAGATGAAAGTTGCTGTGAAAGGTGGAGCTGCAGTAGATCCAGAGTCAGAGATGGAAGACACATGCCATGTGCTTGAAGAAAAAGGAACAGTTTACAGTGCCACCTTGGGTTTAGTTGACATTGTTAGAGGCACCAACTCTTATTACAAACTACAAATTTTAAAAGCTGACCATGGAAATTCTTATCATCTATTCCGATCATGGGGAAGAGTTGGGACAACCATTGGAGGAAACAAACTGGAGCGTTGTGGATCCTCAAGGTCAGCCATTGATAAGTTCATGGAACTTTATGTCGACAAAACAGGAAATAGCTGGCTGGACAGAAAGAACTTTGTCAAGCATCCAAATAAGTTCTATCCACTGGAAATTGACTATGGGCAGGATGACGAGGAGCTTAAAACAACTATTGCAGCAGGAAGTAAATCTTTGCTACCTGTTCCTGTTCAAGAGCTTATTAAAATGATATTTGATGTTGAGTCTATGAAGAAAACACTAGTAGAATTTGAGATCGACTTAAAGAAAATGCCATTGGGAAAGTTGACAAGGCGACAAATAGAAAGTGCTTATTCTGTTTTAGGAGAAGCACAGAAATTGATTTCAGATGGTGGTAGTGCCAATGCTCTTCTGGATGCATCAAACAGGTTCTACACACTGATTCCACACGACTTTGGTATGAAGAAGCCGCCAATGTTAGACAACCTGGAACTAATTCAGGCCAAAGTGGGCATGTTAGACAACTTGCTTGATATTGAAGTGGCTTACAGTTTGTTGAAGAGTGGAGAGAGTGACCTGGCCAAGGATCCTTTAGACGTTAACTATGAAAAATTACAAACTGATTTAGAGGTTCTTGTCAAGGACAGTAAGGAGTATTCTTTGATCAGTGATTACGTGAAAAATACACACGCTGAAACACACTCTCAGTACGAGCTGGATGTCTTGGAGGTGTTCAAAGTGAATCGTCATGGTGAAAGAGAAAGATTTCAACCTTTCAAGGAACTTCATAATCGCCGCTTACTGTGGCATGGCTCGCGCACCACAAACTACGCAGGCATTTTGTCTCAGGGGCTCAGGATCGCGCCTCCCGAGGCCCCAGTGACAGGCTATATGTTTGGAAAAGGTGTATACTTCGCAGATGCTGTTGGCTTTTCTCGTTTCTGTGTCATTGTCCTTGTTGGTGACTTTTTCTCTTCTTTGGCACAGTCAGCAAATTACTGCCGCACCACACCTACTGATAACATTGGTCTGATGATGCTGTGTGAAGTTGCATTAGGAAATATGCATGAACTAACTGCAGCTAGCTACATATCAAAACCTCCTAAAGGAAAGCACAGTGTGAAAGGATGTGGTAAGACAGGCCCAGACCCCTCTGCGGACGTCACACTTGAGGATGGCACGATTGTTCCAGTCGGAAAAGGAACTAACACAAGTGTTGTGAATTCAAGCCTCCTTTACAACGAGTATCCTTTTACCCATGATCAGAAGCTGAATATTCTAACATCCCAGTTCATATACTTTTTGTAA

Transcript

evm.model.contig_11785.6

atggcattttccaggactggaaaGACAGAAGGTTATTGTTGCACAGGAAACTTAACAGGCTGGACCAAGTGCACATTTGTCACAAAGCAGCCCAAGCGAGATACCTGGGTAATTTCTGAAGAGCTGAAGGAAGAGTCAGACTTTTTGAAGAACTTCAAGTTCAAGAAGAGAGAGAGGATATTTCCAAAAGTGCCTGATGTGCCTGTTCCATCATCTAAAGCAGTAATCAAATCTGAAGCTGTTACGTCAATGGCTTCTCCAGTTTCTGCTACGCCTGGCAAGCCACTTTCTGACATGAAATTTGCAGTCATTGGGAGGCTTCAACAGAGCAAGGAGAAAACTACCAGAGCCATACAAGATCTGGGAGGATCAGTAgttgagaaaataaatgctGTTGTTGACTGCTGTATTAGTACGCTAGCTGAAATAGACAAGAAAGGCAAGAAAATGAGAGATGCTGAAAAGTTTGATGTTCCAGTTGTCAGTGAAGATTACTTGGAGGCTGTGAAGAAGGGTGGAGCCAGACTGATGATTTCACAGCATAGTATTGCATCATGGGGAAATACGAAGGGTACCAGTGTGACAGATGGTCCCTCCCCTCCCACTGTGACCAAGGTCAAGAAAAGAGCTTCAGATGGAGGAAGTGGACTGGCAAAGAAGATGAAAGTTGCTGTGAAAGGTGGAGCTGCAGTAGATCCAGAGTCAGAGATGGAAGACACATGCCATGTGCTTGAAGAAAAAGGAACAGTTTACAGTGCCACCTTGGGTTTAGTTGACATTGTTAGAGGCACCAACTCTTATTACAAactacaaattttaaaagctgaCCATGGAAATTCtTATCATCTATTCCGATCATGGGGAAGAGTTGGGACAACCATTGGAGGAAACAAACTGGAGCGTTGTGGATCCTCAAGGTCAGCCATTGATAAGTTCATGGAACTTTATGTCGACAAAACAGGAAATAGCTGGCTGGAcagaaagaactttgtcaaGCATCCAAATAAGTTCTATCCACTGGAAATTGACTATGGGCAGGATGACGAGGAGCTTAAAACAACTATTGCAGCAGGAAGTAAATCTTTGCTACCTGTTCCTGTTCAAGAGCTTATTAAAATGATATTTGATGTTGAGTCTATGAAGAAAACACTAGTAGAATTTGAGATCGActtaaagaaaatgccattGGGAAAGTTGACAAGGCGACAAATAGAAAGTGCTTATTCTGTTTTAGGAGAAGCACAGAAATTGATTTCAGATGGTGGTAGTGCCAATGCTCTTCTGGATGCATCAAACAGGTTCTACACACTGATTCCACACGACTTTGGTATGAAGAAGCCGCCAATGTTAGACAACCTGGAACTAATTCAGGCCAAAGTGGGCATGTTAGACAACTTGCTTGATATTGAAGTGGCTTACAGTTTGTTGAAGAGTGGAGAGAGTGACCTGGCCAAGGATCCTTTAGACGTTAACTATGAAAAATTACAAACTGATTTAGAGGTTCTTGTCAAGGACAGTAAGGAGTATTCTTTGATCAGTGATTACGTGAAAAATACACACGCTGAAACACACTCTCAGTACGAGCTGGATGTCTTGGAGGTGTTCAAAGTGAATCGTCATGGTGAAAGAGAAAGATTTCAACCTTTCAAGGAACTTCATAATCGCCGCTTACTGTGGCATGGCTCGCGCACCACAAACTACGCAGGCATTTTGTCTCAGGGGCTCAGGATCGCGCCTCCCGAGGCCCCAGTGACAGGCTATATGTTTGGAAAAGGTGTATACTTCGCAGATGCTGTTGGCTTTTCTCGTTTCTGTGTCATTGTCCTTGTTGGTgactttttctcttctttggcaCAGTCAGCAAATTACTGCCGCACCACACCTACTGATAACATTGGTCTGATGATGCTGTGTGAAGTTGCATTAGGAAATATGCATGAACTAACTGCAGCTAGCTACATATCAAAACCTCCTAAAGGAAAGCACAGTGTGAAAGGATGTGGTAAGACAGGCCCAGACCCCTCTGCGGACGTCACACTTGAGGATGGCACGATTGTTCCAGTCGGAAAAGGAACTAACACAAGTGTTGTGAATTCAAGCCTCCTTTACAACGAGTATCCTTTTACCCATGATCAGAAGCTGAATATTCTAACATCCCAGTTCATATACTTTTTGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02877 all species →	PARP_reg	Poly(ADP-ribose) polymerase, regulatory domain	Domain	Interproscan
PF00644 all species →	PARP	Poly(ADP-ribose) polymerase catalytic domain	Family	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF08063 all species →	PADR1_Zn_ribbon	PADR1 domain, zinc ribbon fold	Domain	Interproscan
PF05406 all species →	WGR	WGR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036616 all species →	Homologous_superfamily	Poly(ADP-ribose) polymerase, regulatory domain superfamily	Interproscan
IPR012317 all species →	Domain	Poly(ADP-ribose) polymerase, catalytic domain	Interproscan
IPR004102 all species →	Domain	Poly(ADP-ribose) polymerase, regulatory domain	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR050800 all species →	Family	ADP-ribosyltransferase diphtheria toxin-like	Interproscan
IPR012982 all species →	Domain	PARP1-like, PADR1 domain, zinc ribbon fold	Interproscan
IPR008893 all species →	Domain	WGR domain	Interproscan
IPR036930 all species →	Homologous_superfamily	WGR domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10459 all species →	DNA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003950 all species →	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0070212 all species →	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:1990404 all species →	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_11785.6.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.