Gene detail

Detailed information of evm.model.contig_11804.4 in Platygyra sinensis

Genomic Location: contig_11804:47116...60147
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_11804.4

ATGTCCCGTCTTGCAGATTATTTTGTCGTTTGTGGAATAGACAGGGACTCAAAGAATGAAGAAGTGAAAGGAAAGGTGATACAACGGTTTCCAAGCAAAGACCGCAAAGATGCAACGTTTCCAGAAGGACTCGAACTGTTTTGTCAACCTGGAGGATGGAACTACTCCTACTACTACAAACCACCTACATTCTTTGTTGCTGTTCTCACCGACATGGAAGGGGAACACCGATACTGTGCTTGCTTCACATTCTACGAAAAATGCATTCCAACAAAGTCCAAATCTAGAGCAGTGAAGTCAACAAGCAGAGAGGGATTTAAAGACGGCAGCCAGTCAGACTCATCACTGTCAGAAAAAAGATTTTCTGATGGTATTCCTGGGATCTCTGTTAACTCGGAAGAATTCTCAGTAGACATGTTTGCTCCAAAGTGCTTGTGTCTTGTATCAAGAGCAAGTTATTTTGACATCTTAAAGAGCTGCCTGACGACCATCTACTGGTCATTCCTGTCTGGAAACAACAAATCCTTGGAGGGACTGGTCGGCTGTGTCTTAGGCTTTGTCCAGGTGCCACCACCTGGTGGACCAAAGATGACATTTTCCATGGGTGCTGGTGATCGTCAGACACTCTCGCCTCCTGCATCTGAGACTCTTCCAGTAACTGGGAAATCAGTTTCCATCTTGTTAAACCAGTTGGGAATCCACAACGTGTTGTCACTGTTTAGTGCTGCACTGACAGAAAACAAAATCCTGTTTTATTCAAGCAGCTACTCACAGTTGACCCATGCCACACAGTCCATGTTAGCATTGATGTATCCTCTGAAGTTCAGTTATGTGTTCATCCCAATACTGCCATCAGCATTACTTGAATTCTTAAGCGCACCAACACCATACATCATGGGTGTGCATGAAAGTTACAAAGATACTTTGGCACCTGATTTGGCTGATGTAATCCTAGTGGATATTGATGGGGGACATCTTTCTATTCCTGACTCCATAAACCTTCCTTATTTGCCGGAACCATTCCTGAGTAGAGCAAGACATGAACTAACGTTGGTGTTGCATCCTCAACTTGTGACAGCTGATCATGCTTTCCAGACGCCAACATCACCATCTCTTCCAGTCCTTCAGGACAAGGAACTCCGTGCAGTTTTTATCAGGTTGCTTGCCCAGTTGTTTTCTGGTTATCGATCATGTCTGACATTGATTAGAATTCACCCCAAGCCTGTCATAACATTTAACAAGGTTTCTTTCCTGGAGTTCAGGGGTATGGTTGGAGATGCATTCCTCTCTAAGGTCTTGGAGAGCATTTCATTTCTGTCATTTGTGGCTAACAGAGGTCCTCCATACAGAACTTGTGACCTCTTTGACCAGCTGTGTGTTGAGATTGACAGCATTCTGAACAGTGAAGGAGGCAATGACGCTGAAGTACAAGCCAACATTCAACAACTTGCACAAAAGCTGTATGATAATGAACCTTCATGCGACACTGCAGAGAACAACGTCCAGCCTGTTGTTTCTCCAGAAGAGGCTGAATTGTGCAGTAAAATGGTCTTTCCCGAGCTGAAGGAGGCAGACATAAGCCGTCACATCAACCAGCAGGAAAATATGGCATCAGATTACACAGTCAAACATGCTGGACCCTGTGTTGTGCCATCAAATCTTATGTCCAGCCGACAGCAGCATTATATTCCAAGTCGGAAGCTTGAGGTGTTGAGGGACTGTGTGGATTATATCTTTGAAAACAAGATATCTGAGGCTAGAAAGACTCTTCCGTCAGTGGTTAGAGCCCTGAAGTCCAAAGGAGCTCAGTTAGCTCTTTGTCATGAACTCTCTCTCAGAGCTAAGCAACACAGATCAGTCCTGGAGCATGACCAGTTTGACTTGGTTGTCAGACTCTTGAACAGTGCTTTACAGGATGATGCGAGTATGAGTAACACAGCAGTAGCTGCAGCATTGTTACCTCTAACAGCAACTTTTTGCAGAAAACTGAATGCTGGTGTCATCCAATTTGCTTACACTTGCGTTCAAGATCACCCAGTCTGGGAAAGACAACAGTTCTGGGAAGAGGCCTTTTACTCTGATGTTCAGTCTCAGATCCAGCAACTCTATGTGGATGAAGAAGCACCAAAGGCAAATGCAGAAGACACCCTGGACAGAATGGAGCAGCGAACATCTCGTAGCAGCCTGACGCCGGTGACAAAACATCGCAGCTTCACTAGGAGTAGAGATAACCTCTCCTTATCACCCAGAGACTCTGGGAGTTCAGTTGATGTTGAGCAGTCATCTCAATCAGTGCAAAAGCCAGTTCCTAGTGCCTTGAGCATCGCTGCTAAGCAGCTCAAGAAATGGCCTGATTACAGCAAAGAAGAGAAAGACTCTTTGATAAACAGCGAGGAAGGCATTGTGTACAGTCAAGCAATTCATTATGCTAATCGTATGGTGTACATGAGGATCCCACTGGATGCCAGTGAGAAGATGCCAGCACCCACCCCTGCAGCGACATTAGTGGATGGTGATGGCGACAGGTCTGTAAATGGTACATACAGTGAAAGCATAGCAAATGGAATGGCAGGGGTAAGCAGTGAAGTTGGCAGCTGTATTACTGACAGTGGAGGTTGGGAAAGCTATATGGATGATGAAGATGGAGGAACTATTGCTGACCAAGTAACAAGATTTGTCAGTCGGTTTGTGGATCGTGTTGGCACAGAGGCAGGGATTAGTCAGGAACACCTCAAGTCTCTTTATACCATGATTCCAGCCCAGAGTCATTTGTCTGAGGCTTTTTGTGTGGAGGTGTGGAGGCACAGTGGTCTCGTGGTCAATGCGCTTGACTCTGGATCAAGTGGTCCAGGTCCAATCTCTGTCCAGGGACATTGTGTTGTATTCTTGGCCAAGACAATTTACTTTCATAGGGCTTCTCTCTACCCAGGTGTACAGATGGGTACTGGCACAGTTAATGCTGGGGGTAACCCTGTGTAG

Transcript

evm.model.contig_11804.4

ATGTCCCGTCTTGCAGATTATTTTGTCGTTTGTGGAATAGACAGGGACTCAAAGAATGAAGAAGTGAAAGGAAAGGTGATACAACGGTTTCCAAGCAAAGACCGCAAAGATGCAACGTTTCCAGAAGGACTCGAACTGTTTTGTCAACCTGGAGGATGGAACTACTCCTACTACTACAAACCACCTACATTCTTTGTTGCTGTTCTCACCGACATGGAAGGGGAACACCGATACTGTGCTTGCTTCACATTCTACGAAAAATGCATTCCAACAAAGTCCAAATCTAGAGCAGTGAAGTCAACAAGCAGAGAGGGATTTAAAGACGGCAGCCAGTCAGACTCATCACTGTCAGAAAAAAGATTTTCTGATGGTATTCCTGGGATCTCTGTTAACTCGGAAGAATTCTCAGTAGACATGTTTGCTCCAAAGTGCTTGTGTCTTGTATCAAGAGCAAGTTATTTTGACATCTTAAAGagCTGCCTGACGACCATCTACTGGTCATTCCTGTCTGGAAACAACAAATCCTTGGAGGGACTGGTCGGCTGTGTCTTAGGCTTTGTCCAGGTGCCACCACCTGGTGGACCAAAGATGACATTTTCCATGGGTGCTGGTGATCGTCAGACACTCTCGCCTCCTGCATCTGAGACTCTTCCAGTAACTGGGAAATCAGTTTCCATCTTGTTAAACCAGTTGGGAATCCACAACGTGTTGTCACTGTTTAGTGCTGCACTGACAGAAAACAAAATCCTGTTTTATTCAAGCAGCTACTCACAGTTGACCCATGCCACACAGTCCATGTTAGCATTGATGTATCCTCTGAAGTTCAGTTATGTGTTCATCCCAATACTGCCATCAGCATTACTTGAATTCTTAAGCGCACCAACACCATACATCATGGGTGTGCATGAAAGTTACAAAGATACTTTGGCACCTGATTTGGCTGATGTAATCCTAGTGGATATTGATGGGGGACATCTTTCTATTCCTGACTCCATAAACCTTCCTTATTTGCCGGAACCATTCCTGAGTAGAGCAAGACATGAACTAACGTTGGTGTTGCATCCTCAACTTGTGACAGCTGATCATGCTTTCCAGACGCCAACATCACCATCTCTTCCAGTCCTTCAGgACAAGGAACTCCGTGCAGTTTTTATCAGGTTGCTTGCCCAGTTGTTTTCTGGTTATCGATCATGTCTGACATTGATTAGAATTCACCCCAAGCCTGTCATAACATTTAACAAGGTTTCTTTCCTGGAGTTCAGGGGTATGGTTGGAGATGCATTCCTCTCTAAGGTCTTGGAGAGCATTTCATTTCTGTCATTTGTGGCTAACAGAGGTCCTCCATACAGAACTTGTGACCTCTTTGACCAGCTGTGTGTTGAGATTGACAGCATTCTGAACAGTGAAGGAGGCAATGACGCTGAAGTACAAGCCAACATTCAACAACTTGCACAAAAGCTGTATGATAATGAACCTTCATGCGACACTGCAGAGAACAACGTCCAGCCTGTTGTTTCTCCAGAAGAGGCTGAATTGTGCAGTAAAATGGTCTTTCCCGAGCTGAAGGAGGCAGACATAAGCCGTCACATCAACCAGCAGGAAAATATGGCATCAGATTACACAGTCAAACATGCTGGACCCTGTGTTGTGCCATCAAATCTTATGTCCAGCCGACAGCAGCATTATATTCCAAGTCGGAAGCTTGAGGTGTTGAGGGACTGTGTGGATTATATCTTTGAAAACAAGATATCTGAGGCTAGAAAGACTCTTCCGTCAGTGGTTAGAGCCCTGAAGTCCAAAGGAGCTCAGTTAGCTCTTTGTCATGAACTCTCTCTCAGAGCTAAGCAACACAGATCAGTCCTGGAGCATGACCAGTTTGACTTGGTTGTCAGACTCTTGAACAGTGCTTTACAGGATGATGCGAGTATGAGTAACACAGCAGTAGCTGCAGCATTGTTACCTCTAAcagcaactttttgcagaAAACTGAATGCTGGTGTCATCCAATTTGCTTACACTTGCGTTCAAGATCACCCAGTCTGGGAAAGACAACAGTTCTGGGAAGAGGCCTTTTACTCTGATGTTCAGTCTCAGATCCAGCAACTCTATGTGGATGAAGAAGCACCAAAGGCAAATGCAGAAGACACCCTGGACAGAATGGAGCAGCGAACATCTCGTAGCAGCCTGACGCCGGTGACAAAACATCGCAGCTTCACTAGGAGTAGAGATAACCTCTCCTTATCACCCAGAGACTCTGGGAGTTCAGTTGATGTTGAGCAGTCATCTCAATCAGTGCAAAAGCCAGTTCCTAGTGCCTTGAGCATCGCTGCTAAGCAGCTCAAGAAATGGCCTGATTACAGCAAAGAAGAGAAAGACTCTTTGATAAACAGCGAGGAAGGCATTGTGTACAGTCAAGCAATTCATTATGCTAATCGTATGGTGTACATGAGGATCCCACTGGATGCCAGTGAGAAGATGCCAGCACCCACCCCTGCAGCGACATTAGTGGATGGTGATGGCGACAGGTCTGTAAATGGTACATACAGTGAAAGCATAGCAAATGGAATGGCAGGGGTAAGCAGTGAAGTTGGCAGCTGTATTACTGACAGTGGAGGTTGGGAAAGCTATATGGATGATGAAGATGGAGGAACTATTGCTGACCAAGTAACAAGATTTGTCAGTCGGTTTGTGGATCGTGTTGGCACAGAGGCAGGGATTAGTCAGGAACACCTCAAGTCTCTTTATACCATGATTCCAGCCCAGAGTCATTTGTCTGAGGCTTTTTGTGTGGAGGTGTGGAGGCACAGTGGTCTCGTGGTCAATGCGCTTGACTCTGGATCAAGTGGTCCAGGTCCAATCTCTgtccagggacattgtgttgtattCTTGGCCAAGACAATTTACTTTCATAGGGcttctctctacccaggtgtacaGATGGGTACTGGCACagttaatgctgggggtaaccctgtgtaG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02141 all species →	DENN	DENN (AEX-3) domain	Family	Interproscan
PF12335 all species →	SBF2	Myotubularin protein	Family	Interproscan
PF03456 all species →	uDENN	uDENN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051696 all species →	Family	DENN Domain-Containing GEFs	Interproscan
IPR001194 all species →	Domain	cDENN domain	Interproscan
IPR037516 all species →	Domain	Tripartite DENN domain	Interproscan
IPR043153 all species →	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR005113 all species →	Domain	uDENN domain	Interproscan
IPR022096 all species →	Domain	SBF1/SBF2 domain	Interproscan
IPR005112 all species →	Domain	dDENN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12296 all species →	DENN DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032483 all species →	Biological Process	regulation of Rab protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_11804.4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.