Gene detail

Detailed information of evm.model.contig_12092.5 in Platygyra sinensis

Genomic Location: contig_12092:45894...57817
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_12092.5

ATGGCGGACGATTCAAGTGCTGTGCCGATTTGGTGTGATGTTGGAAAGAACTTAAATGCAGCGTATTTGATCGTTAGTTTAAAAGGTGACACAAGAGGAAAACATTCTGGTGATGGCAATTCAATGAAAATTGTAAAAATTTATTCTCGTTATTTGACGTTAAATGGGCCTGTGATGAACGCATGTGCAGATGGCGATACAGAAGGAGACGAAAACAAGGTGCTATATCCAGCTTCAAATATCAATGTACCAAACGATATTGCCGGCAACGTCAAGAGAAGGCTGTTTTCTTTTCTGTGGAAAAATAAAAGAGGCAAAATAAAAAGAGAGGGATTATACCAGGATTATGATAACGGTGGGCTGCGTATGACAGACATTGAAACAATGATAAAAACGTTAAGGTTAGCATGGATTCCAAGACTGTTAAAAAATGTCCAATTAAATTGGAAATTTGCTTCAGACCATTTCCTAAAATCTTATGGAGGACTTCGATTTCTGTTGACGTGTAATTATCACGTAAAAGACTTCCAAAATATGCCCCTATTTTACAGGGACATCCTCCTGTACTTTCATGAACTGAAGACTCTTTACGGATGTGATGTGGGAGATACAATCTTATTTAACAATAAGGAAATTCGTATCGATGGTAAAACGTTTTTCTGGAAGGAATGGTTTATGAAAGGAATTAAAAGAATTGAAGATCTTTTCGATGAAAATGGGCAAGTCCTGCCCTTTCCTGTCTTTCAGCGCAAATATTCGTTGAAGAAAATTTCCTTCCTGCATTATTTCCAAGTTATTTCCGCTATTCCAGGTCACCTCTTGGCAAAAGCAAAATCCAAGGATTCAGGATCTAAAGGTGTTAGTCATGAGGATCTGGAATCTTTCTGTCTAGCTGAAAATGTAAATATAAATTTGCTCAAGGCAAAGTCAAAAGACTTCTATTGGCTAATTATTCATCGTAGATATAATGATCAGCATTCAGGCCCAAGACGATGGAATAGAACTATTACAGAAGACAAAACAAACTGGAAAAAGATATTTAGGTCGGTTCGAAAAGTATGCAAGGAAAACAAGTTAAGAGAATTCCACTTTAAATTCATTCACAGAGTTGTTGTCACAAAGAAGGAATTGTTCCGATTTAACATCAAACCAGATAGTAATTGCGTTTATTGCGGAGAATCAGACTCCATAGATCACACCTTTATTGAGTGCCAGTTCACAAAATCCTTTACTCAAGAAGTATTACAATGGTTTAATGATGATCTGAAGATGGGGTCTGTAGTGGTAGTCAGTGGACCAGTCGCTGCTTTTAGTGTGAACCCAAGGACATGTAGTGGGCTTTCATTGTGTAGAGGAAGTGAAGTTCAAATGAGACTTCAGTTTGAATGTCACTCAAATGACTCACAAGAGAGATTGGTCAAGAGACATATGAAGGAAGAGTTGAGGGAGTTAAGAAATGGATACCACAGTGTCTGTTGCCGGATGTGTGGCTCGGCTGTTTTATTACCTGAGATGCAGTTCAAAAGGGTCCTGGAGTTACCATCAGAAAACTGGCTTGAACTGGCTCAAGACTGGTGTTGTCATGGAAACAGTCATCTAACTTCTGTTGCAGGAGTTCTTGAACCTGGTGAAAAGGACTGTTTTGTCGGTGAATACTATATTAAACTGCACAGTTCAAGTATAAAGCCAGGCAGTCTGCAGATTTTACCAGGGGATGAATATTGCCCTTTGAAATGTTGTAGATGCAATTCCATATTAGGGAGCATTGTGATGGAAGATATAAGTCTTGATACATTGGATGTTAATTGTAGTGATGGATTTAGCATACACCTCTACAAACACACTATCAGTTTGAGATCTAGCAGCTTGTACAGGTCATACTGTGTAGAAACCTTCATTTCTAGCTGTTTAATTTCCAAGTCACAAGGTGCAGTGAACTTCAGGTTTCTTATTCAAGAATCCAGTCAGAATGGCAGTAGACAGCAAGCACATGCCTGTCTTTGGCTTTTTAATGCAGATACCGCGGTCATCACAAATGTAGAATCTTTTAAAGGTGTTGTTAAAAGTGGCATTTATTCCATCAGGAACAAAGCGAAATATTTGCGGGTGCTGAAGATTCTTTACAAGATTAAACCGTTCTTTAATGACCGTCATTGGGATGATGAAGTAGACACATGGCGTGAGAATTCCTCAGTCCAACTCCTCACGTTTACAAAAGAGACTTGTTTACGTCTTATTCTTCTCCTCGCGAAGAGTACAAATACAATAGCGCCCTCACTGCGAGATATGAATGGGTTTAAGGTTGGTTATCTTAGAACACTGAAAAAGTGA

Transcript

evm.model.contig_12092.5

atggcggacgattCAAGTGCTGTGCCGATTTGGTGTGATGTTGGAAAGAACTTAAATGCAGCGTATTTGATCGTTAGTTTAAAAGGTGACACAAGAGGAAAACATTCTGGTGATGGCAATTCaatgaaaattgtaaaaatttatTCTCGTTATTTGACGTTAAATGGGCCTGTGATGAACGCATGTGCAGATGGCGATACAGAAGGAGACGAAAACAAGGTGCTATATCCAGCTTCAAATATCAATGTACCAAACGATATTGCCGGCAACGTCAAGAGaaggctgttttcttttctgtgGAAAAATAAAAGAGGCAAAATAAAAAGAGAGGGATTATACCAGGATTATGATAACGGTGGGCTGCGTATGACAGACATTGAAACAATGATAAAAACGTTAAGGTTAGCATGGATTCCAAGACTGTTAAAAAATGTCcaattaaattggaaatttgctTCAGACCATTTCCTAAAATCTTATGGAGGACTTCGATTTCTGTTGACGTGTAATTATCACGTAAAAGACTTCCAAAATATGCCCCTATTTTACAGGGACATCCTCCTGTACTTTCATGAACTGAAGACTCTTTACGGATGTGATGTGGGAGATACAATCTTATTTAACAATAAGGAAATTCGTATCGATGGTAAAACGTTTTTCTGGAAGGAATGGTTTATGAAAGGAATTAAAAGAATTGAAGATCTTTTCGATGAAAATGGGCAAGTCCTGCCCTTTCCTGTCTTTCAGCGCAAATATTCGTTGAAGAAAATTTCCTTCCTGCATTATTTCCAAGTTATTTCCGCTATTCCAGGTCACCTCTTGGCAAAAGCAAAATCCAAGGATTCAGGATCTAAAGGTGTTAGTCATGAGGATCTGGAATCTTTCTGTCTAGCTGAAAATGTAAATATAAATTTGCTCAAGGCAAAGTCAAAAGACTTCTATTGGCTAATTATTCATCGTAGATATAATGATCAGCATTCAGGCCCAAGACGATGGAATAGAACTATTACAGAAGACAAAACAAACTGGAAAAAGATATTTAGGTCGGTTCGAAAAGTATGCAAGGAAAACAAGTTAAGAGAATTCCACTTTAAATTCATTCACAGAGTTGTTGTCACAAAGAAGGAATTGTTCCGATTTAACATCAAACCAGATAGTAATTGCGTTTATTGCGGAGAATCAGACTCCATAGATCACACCTTTATTGAGTGCCAGTTCACAAAATCCTTTACTCAAGAAGTATTACAATGGTTTAATGATGATCTGAAGATGGGGTCTGTAGTGGTAGTCAGTGGACCAGTCGCTGCTTTTAGTGTGAACCCAAGGACATGTAGTGGGCTTTCATTGTGTAGAGGAAGTGAAGTTCAAATGAGACTTCAGTTTGAATGTCACTCAAATGACTCACAAGAGAGATTGGTCAAGAGACATATGAAGGAAGAGTTGAGGGAGTTAAGAAATGGATACCACAGTGTCTGTTGCCGGATGTGTGGCTCGGCTGTTTTATTACCTGAGATGCAGTTCAAAAGGGTCCTGGAGTTACCATCAGAAAACTGGCTTGAACTGGCTCAAGACTGGTGTTGTCATGGAAACAGTCATCTAACTTCTGTTGCAGGAGTTCTTGAACCTGGTGAAAAGGACTGTTTTGTCGGTGAATACTATATTAAACTGCACAGTTCAAGTATAAAGCCAGGCAGTCTGCAGATTTTACCAGGGGATGAATATTGCCCTTTGAAATGTTGTAGATGCAATTCCATATTAGGGAGCATTGTGATGGAAGATATAAGTCTTGATACATTGGATGTTAATTGTAGTGATGGATTTAGCATACACCTCTACAAACACACTATCAGTTTGAGATCTAGCAGCTTGTACAGGTCATACTGTGTAGAAACCTTCATTTCTAGCTGTTTAATTTCCAAGTCACAAGGTGCAGTGAACTTCAGGTTTCTTATTCAAGAATCCAGTCAGAATGGCAGTAGACAGCAAGCACATGCCTGTCTTTGGCTTTTTAATGCAGATACCGCGGTCATCACAAATGTAGAATCTTTTAAAGGTGTTGTTAAAAGTGGCATTTATTCCATCAGGAACAAAGCGAAATATTTGCGGGTGCTGAAGATTCTTTACAAGATTAAACCGTTCTTTAATGACCGTCATTGGGATGATGAAGTAGACACATGGCGTGAGAATTCCTCAGTCCAACTCCTCACGTTTACAAAAGAGACTTGTTTACGTCTTATTCTTCTCCTCGCGAAGAGTACAAATACAATAGCGCCCTCACTGCGAGATATGAATGGGTTTAAGGTTGGTTATCTTAGAACACTGAAAAAGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09814 all species →	HECT_2	HECT-like Ubiquitin-conjugating enzyme (E2)-binding	Domain	Interproscan
PF13966 all species →	zf-RVT	zinc-binding in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019193 all species →	Family	Ubiquitin-conjugating enzyme E2-binding protein	Interproscan
IPR026960 all species →	Domain	Reverse transcriptase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31531 all species →	E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006513 all species →	Biological Process	protein monoubiquitination	Interproscan
GO:0030332 all species →	Molecular Function	cyclin binding	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0051865 all species →	Biological Process	protein autoubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_12092.5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.