Gene detail

Detailed information of evm.model.contig_12181.10 in Platygyra sinensis

Genomic Location: contig_12181:40417...51068
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_12181.10

ATGGAGGGAGTGATTGCAAATGTTGTTGATGCACATGCAGCAACTCTGACTAAGAGAACTGAAAGAGATGCCTTCTTTTTGAACACACAAAGTATTGTGCAACTTGTACAGAGCTGGGAAAGTGTGGTAGAAGGGGAGACAGGAACGAATTGTCTTGATCCAGGGCACCATCAGGGAGATGATGATGATGATGATGTTGATGATGTTGATGATGTTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATCGTGATGATGATGATGATGATGATGATGATGATCGTGATGATGCCGTGGATCGGCAAAAGCTCGAAGTAGAACAAATCACCATTCACAAAAAAGTAGCAAAGGCCTCACTTGAATCACACTGGTCATTTACAAACATGCTACTAAAGGACAACTTCAATCATCTATTCTGTACAAAAATGCTTTCTGTTTGTCGTATGATAGATATCGCAATGGAATTCGACCAATTGTGTGGACGCCAAACTGGTCTGTCAGATGAACTAAATCACCTTCTTCAAGAGCTTACCACACTCAACAGAAATGACCATGGCAAGGTGGCGCTTAGAGCTCGACAGGCTTTGTTAGCATCTCAGCAGCCATCCTATGAACTTCGTCACAACCAGATTGAGTCACTCTTTCTCTCAGCTATCGACATGTATGGTAACCAGTTGGCTTCAGACAGTTTCCAGAAACTGATACTCTCCGAGACTGCCATATTTGAGTTTCTTCCAAGCTTCTTTTACCATTCCAATGAAGCGGTCAGAAGAGCAGCTCTCGAGGTTTACATCAGGCGCAGTTATCAAGCCTATGAACTCACCACACTGTATCACGAGAAGGTTGAGGAGAATGTCCTACTTGTTCAGTTCCAGTTTATTCTGCCAAATGCGCATCCAAACAGGATGCCGCAGAGAGTTCCTTCTAGTAAAACTGTTCTTGCCATGCCAAGAGTTCGCAGTCTCAGTGAGGATATGTTTGACCTCATAAACCAGCCGCCCCTGCAGCCATGCCAAAGAACAGGTGTCATGGCAGCATTTCAATCCATTCTTGAATTTGAAAGAAACTTTGATGATATCATGAGACGCTTTGAGCCACCGACCCCTGAGCAGCTGTCTCCGTCCCCCCTGACAAGAAGGATGAGCCTTGATCCAGTGTGGGAAACTGACAACAGGACAGAGCCTGGTGCACGGAAGGAAGAAGAACCTGTTCACATCATTAACATTGCTTTGCAAATTGAGAAGAACTGTAAAGATGTGGAAATTTGCCGCAAGATGGTGTACGAGTTTACCCAATCCAAGAAAGAGATTTTAAAGGACAAGGGAATCAGAAGAATTACTTACTTGCTTAGCGATTGTAAGGGTATGCTACCGTGGTTCTTTACCTTCAGAGCTCAAGAAAACTTTGAAGAGGATTCCATTTACCGTCATTTGGAGCCCGCACTCGCTTTCCAGTTGGAAGTTTACCGGCTACGAAACTTTGATCTGCAGACGATTCCAACCACAAATCACAACCTCCATTTGTATCTAGGATCAGCCAAGAAGGTTTCAGCTCAGTCAGAAGTCACCGACTACAGGTTCTTCATCAGGAGTATTGTGAGGCACTCGGATTTCATCACCAAAGAAGCATCTTTTGAATACATGGAAAAGGAGAGTGAGATTCAGCTTCTCGAAGCTTTAGATCAGCTAGAAGTTTGTTTTTCAGAGTGTCCCAAGAGGACGGATTGTAATCACATTTTTCTTCACTTTGTTCCATGCGTGATCATAGAGCCCCACAGGATTGAAGAGAGTATCCGTGACATTGTCACAAGGTATGGTAGACGACTTTGGAAACTTCGTGTTCTTCAAGCTGAAATGAAAGTCACTATCAGGCTCACACCCACCGGGAAAAAGATTCCTCTGCGATTATTTATCTCCAACGAGTCTGGGTATTACCTCGGCTTTCATATTTATCGTGAGGTGACGGATGTAAGAACAGGACAGATAGTGTTCGAGTCCTACGATCAGAAGCAGGGTCCTCACCATGGCCTTCCTGTCAGTACACCTTATGTCACCAAAGATCATTTACAGCTGAAACGGTTTTCTGCGCAGTCTCTTGGAACCACTTATGTGTATGACTTCCCTGAGCTTTTCCAGCAGGTGATTAGATACATGTAG

Transcript

evm.model.contig_12181.10

ATGGAGGGAGTGATTGCAAATGTTGTTGATGCACATGCAGCAACTCTGACTAAGAGAACTGAAAGAGATGCCTTCTTTTTGAACACACAAAGTATTGTGCAACTTGTACAGAGCTGGGAAAGTGTGGTAGAAGGGGAGACAGGAACGAATTGTCTTGATCCAGGGCACCATCAgggagatgatgatgatgatgatgttgatgatgttgatgatgttgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatcgtgatgatgatgatgatgatgatgatgatgatcgtGATGATGCCGTGGATCGGCAAAAGCTCGAAGTAGAACAAATCACCATTCACAAAAAAGTAGCAAAGGCCTCACTTGAATCACACTGGTCATTTACAAACATGCTACTAAAGGACAACTTCAATCATCTATTCTGTACAAAAATGCTTTCTGTTTGTCGTATGATAGATATCGCAATGGAATTCGACCAATTGTGTGGACGCCAAACTGGTCTGTCAGATGAACTAAATCACCTTCTTCAAGAGCTTACCACACTCAACAGAAATGACCATGGCAAGGTGGCGCTTAGAGCTCGACAGGCTTTGTTAGCATCTCAGCAGCCATCCTATGAACTTCGTCACAACCAGATTGAGTCACTCTTTCTCTCAGCTATCGACATGTATGGTAACCAGTTGGCTTCAGACAGTTTCCAGAAACTGATACTCTCCGAGACTGCCATATTTGAGTTTCTTCCAAGCTTCTTTTACCATTCCAATGAAGCGGTCAGAAGAGCAGCTCTCGAGGTTTACATCAGGCGCAGTTATCAAGCCTATGAACTCACCACACTGTATCACGAGAAGGTTGAGGAGAATGTCCTACTTGTTCAGTTCCAGTTTATTCTGCCAAATGCGCATCCAAACAGgATGCCGCAGAGAGTTCCTTCTAGTAAAACTGTTCTTGCCATGCCAAGAGTTCGCAGTCTCAGTGAGGATATGTTTGACCTCATAAACCAGCCGCCCCTGCAGCCATGCCAAAGAACAGGTGTCATGGcagcatttcaatccattcttGAATTTGAAAGAAACTTTGATGATATCATGAGACGCTTTGAGCCACCGACCCCTGAGCAGCTGTCTCCGTCCCCCCTGACAAGAAGGATGAGCCTTGATCCAGTGTGGGAAACTGACAACAGGACAGAGCCTGGTGCACGGAAGGAAGAAGAACCTGTTCACATCATTAACATTGCTTTGCAAATTGAGAAGAACTGTAAAGATGTGGAAATTTGCCGCAAGATGGTGTACGAGTTTACCCAATCCAAGaAAGAGATTTTAAAGGACAAGGGAATCAGAAGAATTACTTACTTGCTTAGCGATTGTAAGGGTATGCTACCGTGGTTCTTTACCTTCAGAGCTCAAGAAAACttTGAAGAGGATTCCATTTACCGTCATTTGGAGCCCGCACTCGCTTTCCAGTTGGAAGTTTACCGGCTACGAAACTTTGATCTGCAGACGATTCCAACCACAAATCACAACCTCCATTTGTATCTAGGATCAGCCAAGAAGGTTTCAGCTCAGTCAGAAGTCACCGACTACAGGTTCTTCATCAGGAGTATTGTGAGGCACTCGGATTTCATCACCAAAGAAGCATCTTTTGAATACATGGAAAAGGAGAGTGAGATTCAGCTTCTCGAAGCTTTAGATCAGCTAGAAGTTTGTTTTTCAGAGTGTCCCAAGAGGACGGATTGTAATCACATTTTTCTTCACTTTGTTCCATGCGTGATCATAGAGCCCCACAGGATTGAAGAGAGTATCCGTGACATTGTCACAAGGTATGGTAGACGACTTTGGAAACTTCGTGTTCTTCAAGCTGAAATGAAAGTCACTATCAGGCTCACACCCACCGGGAAAAAGATTCCTCTGCGATTATTTATCTCCAACGAGTCTGGGTATTACCTCGGCTTTCATATTTATCGTGAGGTGACGGATGTAAGAACAGGACAGATAGTGTTCGAGTCCTACGATCAGAAGCAGGGTCCTCACCATGGCCTTCCTGTCAGTACACCTTATGTCACCAAAGATCATTTACAGCTGAAACGGTTTTCTGCGCAGTCTCTTGGAACCACTTATGTGTATGACTTCCCTGAGCTTTTCCAGCAGGTGATTAGATACATGTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08326 all species →	ACC_central	Acetyl-CoA carboxylase, central region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049076 all species →	Family	Acetyl-CoA carboxylase	Interproscan
IPR013537 all species →	Domain	Acetyl-CoA carboxylase, central domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45728 all species →	ACETYL-COA CARBOXYLASE, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003989 all species →	Molecular Function	acetyl-CoA carboxylase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05730	VAV; guanine nucleotide exchange factor VAV	-	Lipid and atherosclerosis	ko05417	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.