Gene detail

Detailed information of evm.model.contig_12475.5 in Platygyra sinensis

Genomic Location: contig_12475:15196...28510
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_12475.5

ATGGAGGATGACAGATCATGTCACAGCAGAAACAATGACAAACCAACAATAACCTTTCTTGTTTCAGGTGAGGTTACCAGTAGTAGCCCTGAATGGAAGAAGTGTGATGTGATTGCAAAAGTGATAGCAAACTGTCCAAGTCAAGCAAAGTCTGTTGAGGAGTATTATAAGTTAGTGTCACCACAGGTGTTGCAGTTATTACGAGGAGAAACCAACGGTGTTGGAAAATTATTTGCCAGAGTTGCTTCAGCTATCATAAAGGAGATGTTGAGGCAATACCCTGAACTGGCTCAGAAATATGTCCTTTCTCCAATCATTGAACCTTTAATTCAAACCACGACAATTCCAGATGAAAAAACTGGTGGTGATTTTGTTGATGAGCTCACAGTTACAAGATGTGTTGAAGGTATCCACAAGGTCTTCGTTTCAGGAACACTTGATGATGAGTTAAGATTTTTGTTGCCAGTTGTCCATCCGGTGTTTAAAATCTTCTGTTTCACAAGGAAAGGAATTTCTCTTCTAAGGATGAGCCCACCAGAGAATTTAGTTCTAACAGACACTAATGCAGGCCACAAAAATGAGAAACAAGACTTTTTTGTTGCTGTTATGATTGACAATTTTGTGTTTGCACATGGAGATGATGGTGGTGTGATGATTAGATATCGGAATGATAATGCTGATGAACATGAATGCGATGAACATGGTAATGTTGACGAAATCTTGAGGGACTTGCAAGGAGCTGATTTAAGTAGCAGTGAAGTGCGAGCATTGTGCATTGTGGAGCTCTTGGATGGTCTGAAGAAGGATGATGTTAGTGGAGACTTCTTTATATACCTGATGCAGGAGTTGGCAAATATCATATCAGACTTCTCAGATGATATGGACATTACAAACTCTGGAGATACACAACACAGTCTTCTGATCCTCCATCTTATTGCGCTCATGTGTGAGAGACTTGGAGAGTCCATTCTCAGAAATGCTTCACAGATGCTCATCTTCATAGAGTCTACACTGAAGCGTGCCTGTGCCATTATGCATGCAGCCAGGGAAAGAAAATGCTCATTTAAAAGAAAAATTATCTTGACATCCACTCAAGGAAAAGCTACCTCCACATTTGACGAAGCATTTTCCCAGCTCTGTGATCCTTTGCTTCCTGTGCGAGGTCATGCAATGATACAACTGGCAATGCTTTTGCGACAGAGAGACCCTAAAGCTGTGCAAGCCACTCATACATGTACCTTATTGAAGATTTTTCTGGAACAGCTTTCACACGATGACTCATATATTTACCTAGCTGCTATTCAGGGACTTGTCTCATTGGCTGATAAGGAGGTTGGAAATGTTCCAGTCAAGACAAAGGATGCTAACGAGAAGGGTTATTATAAACAAAGTGAAGGAGCTTTACCCTTATCAAACCGACCTGCCAGATCTCCTGAGCAAAGAATGAAGTTAGGAGAGGCTCTCGTCCGAGCCACCAGGAACTGCAGTGAACTGGTACCTAGATATTCTCAACATCTTTTATCAACCTTGTTGACTGGGGTAAAGGATCCTGAGCCTCTTGTCCGGGCCAGCAGTCTCTCCAATCTTGGTGATGTTTGCCAGTTGTTGAGGTTCTCATTGGGTCCAGTTGTACATGAGATTTTCAGTTGCGTGTCAGCAGTATTGAAAACTGACAAGTCAGCAGAAGTCAGGCGTGCTGCAGTACTAGTCATTACTTTAATACTGCGGGGACTGGGGAAGAACATAATGGAGTTTTTGGCCGTTTACTGTCGTTGGTCAGGCGGAAATTGCCTGACATTGTTTGACCTAGCCCAAAGCCGGCATTACATGTCCCAATCCCGGGGTCCCAATGCTGACAGCAGCCGAAAAATGTCACTAAATCCCTGTTGCGTGACATACATACCGACCGGCCTGCAGTCATTGTCACTAAACAACTCAGCAGGAGTGCCCTTTGAAATGGTCAACAAGAGAAACGTCTTTGCAGCAGCCGAATACAAAATTTTGATTAAACGTCCAAATGCAGTGAATTTGTTTTACAAGGCAGGGAACAGGGAACACGTCAAAGGGATGTGCGGTGCCTCATGGCCAGTGCGGGTTCGAGTCCTGGCCGGGAACACTGTTTTGTGTTCTTGGGCAAGACACTTCACTCTCACGGTGCCTCTCGCCACCCAGGTCACAGTAACTACTAACTATACCCAGGTGTATAAATGGGTACCGCGGATGCTGAGAGTGAGTACTTCGCCGTTGATTAACTGCGAAATATTCGCTCTACATTATAATACAGAGTGA

Transcript

evm.model.contig_12475.5

ATGGAGGATGACAGATCATGTCACAGCAGAAACAATGACAAACCAACAATAACCTTTCTTGTTTCAGGTGAGGTTACCAGTAGTAGCCCTGAATGGAAGAAGTGTGATGTGATTGCAAAAGTGATAGCAAACTGTCCAAGTCAAGCAAAGTCTGTTGAGGAGTATTATAAGTTAGTGTCACCACAGGTGTTGCAGTTATTACGAGGAGAAACCAACGGTGTTGGAAAATTATTTGCCAGAGTTGCTTCAGCTATCATAAAGGAGATGTTGAGGCAATACCCTGAACTGGCTCAGAAATATGTCCTTTCTCCAATCATTGAACCTTTAATTCAAACCACGACAATTCCAGatgaaaaaaCTGGTGGTGATTTTGTTGATGAGCTCACAGTTACAAGATGTGTTGAAGGTATCCACAAGGTCTTCGTTTCAGGAACACTTGATGATGAGTTAAGATTTTTGTTGCCAGTTGTCCATCCGGTGTTtaaaatcttctgtttcacAAGGAAAGGAATTTCTCTTCTAAGGATGAGCCCACCAGAGAATTTAGTTCTAACAGACACTAATGCAGGCCACAAAAATGAGAAACAAGActtttttgttgctgttatGATTGACAATTTTGTGTTTGCACATGGAGATGATGGTGGTGTGATGATTAGATATCGGAATGATAATGCTGATGAACATGAATGCGATGAACATGGTAATGTTGACGAAATCTTGAGGGACTTGCAAGGAGCTGATTTAAGTAGCAGTGAAGTGCGAGCATTGTGCATTGTGGAGCTCTTGGATGGTCTGAAGAAGGATGATGTTAGTGGAGACTTCTTTATATACCTGATGCAGGAGTTGGCAAATATCATATCAGACTTCTCAGATGATATGGACATTACAAACTCTGGAGatacaCAACACAGTCTTCTGATCCTCCATCTTATTGCGCTCATGTGTGAGAGACTTGGAGAGTCCATTCTCAGAAATGCTTCACAGATGCTCATCTTCATAGAGTCTACACTGAAGCGTGCCTGTGCCATTATGCATGCAGCCAGGGAAAGAAAatgctcatttaaaagaaaaattatcttgACATCCACTCAAGGAAAAGCTACCTCCACATTTGACGAAGCATTTTCCCAGCTCTGTGATCCTTTGCTTCCTGTGCGAGGTCATGCAATGATACAACTGGCAATGCTTTTGCGACAGAGAGACCCTAAAGCTGTGCAAGCCACTCATACATGTACCTTATTGAAGATTTTTCTGGAACAGCTTTCACACGATGACTCATATATTTACCTAGCTGCTATTCAGGGACTTGTCTCATTGGCTGATAAGGAGGTTGGAAATGTTCCAGTCAAGACAAAGGATGCTAACGAGAAGGgttattataaacaaagtgAAGGAGCTTTACCCTTATCAAACCGACCTGCCAGATCTCCTGAGCAAAGAATGAAGTTAGGAGAGGCTCTCGTCCGAGCCACCAGGAACTGCAGTGAACTGGTACCTAGATATTCTCAACATCTTTTATCAACCTTGTTGACTGGGGTAAAGGATCCTGAGCCTCTTGTCCGGGCCAGCAGTCTCTCCAATCTTGGTGATGTTTGCCAGTTGTTGAGGTTCTCATTGGGTCCAGTTGTACATGAGATTTTCAGTTGCGTGTCAGCAGTATTGAAAACTGACAAGTCAGCAGAAGTCAGGCGTGCTGCAGTACTAGTCATTACTTTAATACTGCGGGGACTGGGGAAGAACATAATGGAGTTTTTGGCCGTTTACTGTCGTTGGTCAGGCGGAAATTGCCTGACATTGTTTGACCTAGCCCAAAGCCGGCATTACATGTCCCAATCCCGGGGTCCCAATGCTGACAGCAGCCGAAAAATGTCACTAAATCCCTGTTGCGTGACATACATACCGACCGGCCTGCAGTCATTGTCACTAAACAACTCAGCAGGAGTGCCCTTTGAAATGGTCAACAAGAGAAACGTCTTTGCAGCAGCCGAATACAAAATTTTGATTAAACGTCCAAATGCAGTGAATTTGTTTTACAAggcagggaacagggaacacgTCAAAGggaTGTGCGGTGCCTCATGGCCAGtgcgggttcgagtcctggccgggaacactgttttgtgttcttgggcaagacacttcactctcacggtgcctctcgcCACCCAGGTCACAGTAACTACTAACtatacccaggtgtataaatgggtaccgcggATGctgagagtgagtacttcgccgttgattaactgcgaaatattcgctcTACATTATAATacagagtga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10363 all species →	RTP1_C1	Required for nuclear transport of RNA pol II C-terminus 1	Repeat	Interproscan
PF02985 all species →	HEAT	HEAT repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019451 all species →	Domain	RNA polymerase II assembly factor Rtp1, C-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR039600 all species →	Family	TANGO6/Rtp1	Interproscan
IPR000357 all species →	Repeat	HEAT repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20959 all species →	TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009306 all species →	Biological Process	protein secretion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_12475.5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.