Gene detail

Detailed information of evm.model.contig_12889.2 in Platygyra sinensis

Genomic Location: contig_12889:26902...34436
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00133 all species →	tRNA-synt_1	tRNA synthetases class I (I, L, M and V)	Domain	Interproscan
PF13495 all species →	Phage_int_SAM_4	Phage integrase, N-terminal SAM-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002303 all species →	Family	Valine-tRNA ligase	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR002104 all species →	Domain	Integrase, catalytic domain	Interproscan
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR002300 all species →	Domain	Aminoacyl-tRNA synthetase, class Ia	Interproscan
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR010998 all species →	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR004107 all species →	Domain	Integrase, SAM-like, N-terminal	Interproscan
IPR044068 all species →	Domain	Core-binding (CB) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11946 all species →	VALYL-TRNA SYNTHETASES	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004832 all species →	Molecular Function	valine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006438 all species →	Biological Process	valyl-tRNA aminoacylation	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_12889.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.