Gene detail

Detailed information of evm.model.contig_13189.4 in Platygyra sinensis

Genomic Location: contig_13189:24758...32582
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18517 all species →	LZ3wCH	Leucine zipper with capping helix domain	Domain	Interproscan
PF07106 all species →	TBPIP	TBPIP/Hop2 winged helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR040661 all species →	Domain	Leucine zipper with capping helix domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR010776 all species →	Domain	Homologous-pairing protein 2, winged helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15938 all species →	TBP-1 INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000709 all species →	Biological Process	meiotic joint molecule formation	Interproscan
GO:0000794 all species →	Cellular Component	condensed nuclear chromosome	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0007129 all species →	Biological Process	homologous chromosome pairing at meiosis	Interproscan
GO:0010774 all species →	Biological Process	meiotic strand invasion involved in reciprocal meiotic recombination	Interproscan
GO:0120230 all species →	Molecular Function	recombinase activator activity	Interproscan
GO:0120231 all species →	Cellular Component	DNA recombinase auxiliary factor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06695	PSMC3IP; 26S proteasome regulatory subunit, ATPase 3, interacting protein	-	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.