Gene detail

Detailed information of evm.model.contig_13248.1 in Platygyra sinensis

Genomic Location: contig_13248:462...9585
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_13248.1

ATGATGGACGAGGAGTTGATGTGCGAAAGTTTGATGAAATGGGTCAGTACCTTTGAAGGAATCAAAGCTTCTCATTCAACTGTGGAGGAATTAACTGATGGAGTTGCCCTCGGTGAATGCTTGGCTGAAATTGCTCCAGATTGGTTTGATGATGAGTGGGTATCAAAAATTAGACATGATACAGGAGATAATAGGAGACTCAAGGTAAACAACCTGAAGAAACTTGTGAAGGGAGTACATGATTACTATACTGAGGTGCTGTCAATGGATATTTCAGGATTTCCAATGCCTGATGTCAATGCTATAGTGTATTACCGTCTGTTTCTATTGGTACACATTTTAAGTGAGATGCTTAGTGGAGTTCGAGAGGACCTGTTAAGTCTTCGAACGAAATTGACCGTGGGAGTCGTTAACCTGTCATTGAAAGGGTATGTGGAAGAACTGCAACAGAAATATGAAAGTAAAGTGGAGCAAGGCTGTGGATGTGACTTGAAAGTTTTAAATACAATGAGAGAAGATAACATTGGCTCTGCATTAATTCCAAAGGAAGAATTGGGAGAAGAAATGAAAGCACTGAAGACAACTGCTGATGGAAACTGTCTCTTCAATTCAGCATCGATTTTACTTCGAGGTGATGAGTCTGACAGCCATGTGCTCAGATTGCTAACTGCAGTGGAGCTCTTTCTGAATCCCCAGTACTATGCCAACCACCCGAAATTAACTGAAGCTAAAACATTCTCAAGCTTCTCTGACACCACTTTATTTTCGTTGCTACTAAGTGACAGTGGACAAAAAGAGTTTGAAAAAAAAGGTAGCCGAGCAGATGCTGTTCAAGCTGAGGCCATGTCAACTTGCAAATTGGGAAAGTGGGGTACATTTCTTGATGTAATGGCAGTAGCAACTGTGCTGAAGCGACCACTTTTCTCAGTTTATCCCTTATTTGAATCTAATAAAGGGATACGACCACTTTTAAATGGTCTTTTGCAGCCCCGTGTCACAACTGGGAAAGATAGTAGAGCAGTCCATATCTTGTGGTCAAGGGAAGGTTTTGATAATCGACCTGGCATAATTTTCCAGCCCAACCATTTTGTTCCTGTCATTTCTCACCTCTCAAGTACCCAGCCAAGCATGACTGCCAACAAGGACATGCCTTCTGTTAAAATCGAGGCTTCACCTGCATCAGGCAAGCAAAAGGGAATCTCTGAATTCTTCCAGCCTGCTAAACATGCTACGAAGAGGTCTTCTTTTCAAGCTGGTTTAACGTCAGCTAGTGAAAATGACCGCGTCCCGAGTTTAAAGGTGCCAAAGGAGTCAGTTGTTACAATAAGAAAATTTCAAGATTCTTGGAAAGTCGAATTCCCATGGGTTATGTACGATGCTGGCTCCAACACTATGTTTTGTGATTTCTGCCGGAAGGCTGGATCAAAAATTGCCGGTAAAACTGATTTTGTTTCTGGTTCAAAAACATTCAAGAAGGAGACACTGAAAAAGCATGGTGAAAGCCACAGTCATTTACGTGCACGTGACTTTGTAATAAATGAGCAACGCCCAGTGACACAAGGACCTCTCTTCAAAGGTTTCAAGAAAGCTGCTGAGAAGGTGGAGGAACAAGCATTTAAAGAAGTGTCAGTAAAAATGAACACTGCCTACTTCATTGCCAAGGAAGAGCTGCCATTCACAAAGTTTCCTGGTCTACTTCAGCTTCAGCAGAAAAATGGGGTTAAAGTGAGTAATACCTATGCAAATGACACTAAATGTGCAGAAATGGTCTCAACTGTCGCCACTCTAATAAAGGAGGAAAATGCCTTTAAACTACAAAATGAGGCAAGGTACATTTCTGTTATGATCGATGGTGCCACAGATACCTCCAGCACAGAAAATGAAATTGTTTATGCAAGATGTGTAAATAATGGTCGACCAGTTAACCTTCTAGTGGGTCACACACCTGTGGAGCATGCTCATTCAGAAGGTCTTGTGCAGGTTGTTGATGGCTGTTTTAAAGACCTTGGGTTCCAGCACTGGAAGAAAAGCATGATAGGATTTGGTGCAGATGGTGCAGCAGTAAATCTGGGAAAACGACAAGGTGTTTCAGCTATTCTGAAAAGAGAAATCTTTCACTTGATTGATATCCACTGCCTGCCACATCGGCTGGAACTCTCGATGCTTGAAATGCAACGAGAATGTAAATTTGTTCAGAACGTGTACGATATTTTGCACCTAGTGTGGAAAACATACCATTATAGCCCGAAAAGTAGGCGAGAATTAGATGCATTGGGGAAAGAGCTCGGACTGGATGTTCTTAAGCCTAGACCCGTGAAAGGCTCAAGGTGGCTCCCTCATGTCAGTGGAGCTCTGAAAGTTTTCATTAAGCCCCAGAAAGATGGAAACATGTCCCGTGATCCAGCTCAGTATGCTGCTGTCCTTACGCACATGGAACACCTTGCGACAACATCAACTAATTCAGATGTGAAAGGGAGAGCCAAATTCATCATTAAAGCCATGAAAACAGTGTCTTTTGTATGCTTTTGTCATTTCCTTGCTGACTTGTTTGAGGTTCTAAGCAAGCTCAGTGTTCAGTTTCAGCGAAATGAGCTCATCCTACCATGTGCTGTATCTCTTTTAGAGGAGACTGTCTCAAACATCACTCTTCTTTGTAAGCGACCAGTTCCGGGAGGAAGACTTCACACTTTCTTGAGTAACTTACAGGCTTGTAATGGTTCTTTCATGTTTCAAGGCATCATCCTGTCAGGAGATACCAGCGGTCTAACTCCTGTTGAGATCACTCACGCAAATGGTGTAGGGGCCCAGATAAAAAGAGCTACAGATCTCTGTTTATCTGGATTGAAACAAAGATTTGATGTCATGCTGCAAACATCTGACATCAAAAAAACTGCACAGGCACCTTGTGGACCAAACCAAGCTATTAAGGACTTTTTGATCTTTAATCCTGATGCATGGCCTTCAAATCAATGTGACCTCATTGATTTTGGGCAACAGCCAATTGAGCGCCTTGTCAAGTGGTTTCAGCCACTGCTTGAGAGAAAGGGTTGTTGCATCCCAGCCATTGCACCCCAGTGGGTATCTTTAAAGATCTTGGTCAGCACGCAGTTTAAAGATAAAAGCTATGAAGATCTATGGGCCATTTTCCTGACAAAGGCACCCTACAAAGAAGATCTGAAGGATGTTCTTCACCTGGTCGAGATTATGTTAGTCCTTCCCATCTCTGCTGCTCAATGTGAAAGAGCCATTTCGGCCCAGAACAGAATCAAAAATGATTCACGCTCTTGTCTGGGTGGTCAAACACTGGAAGAATTGATGAGGATCTCACTGGAGGGTCCTTCTCTCGCACACTTTGACCCTGAACCAGCGGTAAAGGCCTGGTTTCAGGCGTCGAAAAGATCACGAAGGCCCTTTCTTAGATCTTAA

Transcript

evm.model.contig_13248.1

ATGATGGACGAGGAGTTGATGTGCGAAAGTTTGATGAAATGGGTCAGTACCTTTGAAGGAATCAAAGCTTCTCATTCAACTGTGGAGGAATTAACTGATGGAGTTGCCCTCGGTGAATGCTTGGCTGAAATTGCTCCAGATTGGTTTGATGATGAGTGGGTATCAAAAATTAGACATGATACAGGAGATAATAGGAGACTCAAGGTAAACAACCTGAAGAAACTTGTGAAGGGAGTACATGATTACTATACTGAGGTGCTGTCAATGGATATTTCAGGATTTCCAATGCCTGATGTCAATGCTATAGTGTATTACCGTCTGTTTCTATTGGTACACATTTTAAGTGAGATGCTTAGTGGAGTTCGAGAGGACCTGTTAAGTCTTCGAACGAAATTGACCGTGGGAGTCGTTAACCTGTCATTGAAAGGGTATGTGGAAGAACTGCAACAGAAATATGAAAGTAAAGTGGAGCAAGGCTGTGGATGTgacttgaaagttttaaatACAATGAGAGAAGATAACATTGGCTCTGCATTAATTCCAAAGGAAGAATTGGGAGAAGAAATGAAAGCACTGAAGACAACTGCTGATGGAAACTGTCTCTTCAATTCAGCATCGATTTTACTTCGAGGTGATGAGTCTGACAGCCATGTGCTCAGATTGCTAACTGCAGTGGAGCTCTTTCTGAATCCCCAGTACTATGCCAACCACCCGAAATTAACTGAAGCTAAAACATTCTCAAGCTTCTCTGACACCACTTTATTTTCGTTGCTACTAAGTGACAGTGGACAAAAAGAGTTTGAAAAAAAAGGTAGCCGAGCAGATGCTGTTCAAGCTGAGGCCATGTCAACTTGCAAATTGGGAAAGTGGGGTACATTTCTTGATGTAATGGCAGTAGCAACTGTGCTGAAGCGACCACTTTTCTCAGTTTATCCCTTATTTGAATCTAATAAAGGGATACGACCACTTTTAAATGGTCTTTTGCAGCCCCGTGTCACAACTGGGAAAGATAGTAGAGCAGTCCATATCTTGTGGTCAAGGGAAGGTTTTGATAATCGACCTGGCATAATTTTCCAGCCCAACCATTTTGTTCCTGTCATTTCTCACCTCTCAAGTACCCAGCCAAGCATGACTGCCAACAAGGACATGCCTTCTGTTAAAATCGAGGCTTCACCTGCATCAGGCAAGCAAAAGGGAATCTCTGAATTCTTCCAGCCTGCTAAACATGCTACGAAGAGGTCTTCTTTTCAAGCTGGTTTAACGTCAGCTAGTGAAAATGACCGCGTCCCGAGTTTAAAGGTGCCAAAGGAGTCAGTTGTTACAATAAGAAAATTTCAAGATTCTTGGAAAGTCGAATTCCCATGGGTTATGTACGATGCTGGCTCCAACACTATGTTTTGTGATTTCTGCCGGAAGGCTGGATCAAAAATTGCCGGTAAAACtgattttgtttctggttcaaaAACATTCAAGAAGGAGACACTGAAAAAGCATGGTGAAAGCCACAGTCATTTACGTGCACGTGACTTTGTAATAAATGAGCAACGCCCAGTGACACAAGGACCTCTCTTCAAAGGTTTCAAGAAAGCTGCTGAGAAGGTGGAGGAACAAGCATTTAAAGAAGTGTCAGTAAAAATGAACACTGCCTACTTCATTGCCAAGGAAGAGCTGCCATTCACAAAGTTTCCTGGTCTACTTCAGCTTCAGCAGAAAAATGGGGTTAAAGTGAGTAATACCTATGCAAATGACACTAAATGTGCAGAAATGGTCTCAACTGTCGCCACTCTAATAAAGGAGGAAAATGCCTTTAAACTACAAAATGAGGCAAGGTACATTTCTGTTATGATCGATGGTGCCACAGATACCTCCAGCACAGAAAATGAAATTGTTTATGCAAGATGTGTAAATAATGGTCGACCAGTTAACCTTCTAGTGGGTCACACACCTGTGGAGCATGCTCATTCAGAAGGTCTTGTGCAGGTTGTTGATGGCTGTTTTAAAGACCTTGGGTTCCAGCACTGGAAGAAAAGCATGATAGGATTTGGTGCAGATGGTGCAGCAGTAAATCTGGGAAAACGACAAGGTGTTTCAGCTATTCTGAAAAGAGAAATCTTTCACTTGATTGATATCCACTGCCTGCCACATCGGCTGGAACTCTCGATGCTTGAAATGCAACGAGAATGTAAATTTGTTCAGAACGTGTACGATATTTTGCACCTAGTGTGGAAAACATACCATTATAGCCCGAAAAGTAGGCGAGAATTAGATGCATTGGGGAAAGAGCTCGGACTGGATGTTCTTAAGCCTAGACCCGTGAAAGGCTCAAGGTGGCTCCCTCATGTCAGTGGAGCTCTGAAAGTTTTCATTAAGCCCCAGAAAGATGGAAACATGTCCCGTGATCCAGCTCAGTATGCTGCTGTCCTTACGCACATGGAACACCTTGCGACAACATCAACTAATTCAGATGTGAAAGGGAGAGCCAAATTCATCATTAAAGCCATGAAAACAGTGTCTTTTGTATGCTTTTGTCATTTCCTTGCTGACTTGTTTGAGGTTCTAAGCAAGCTCAGTGTTCAGTTTCAGCGAAATGAGCTCATCCTACCATGTGCTGTATCTCTTTTAGAGGAGACTGTCTCAAACATCACTCTTCTTTGTAAGCGACCAGTTCCGGGAGGAAGACTTCACACTTTCTTGAGTAACTTACAGGCTTGTAATGGTTCTTTCATGTTTCAAGGCATCATCCTGTCAGGAGATACCAGCGGTCTAACTCCTGTTGAGATCACTCACGCAAATGGTGTAGGGGCCCAGATAAAAAGAGCTACAGATCTCTGTTTATCTGGATTGAAACAAAGATTTGATGTCATGCTGCAAACATCTGACATCAAAAAAACTGCACAGGCACCTTGTGGACCAAACCAAGCTATTAAGGACTTTTTGATCTTTAATCCTGATGCATGGCCTTCAAATCAATGTGACCTCATTGATTTTGGGCAACAGCCAATTGAGCGCCTTGTCAAGTGGTTTCAGCCACTGCTTGAGAGAAAGGGTTGTTGCATCCCAGCCATTGCACCCCAGTGGgtatctttaaagatcttggtCAGCACGCAGTTTAAAGATAAAAGCTATGAAGATCTATGGGCCATTTTCCTGACAAAGGCACCCTACAAAGAAGATCTGAAGGATGTTCTTCACCTGGTCGAGATTATGTTAGTCCTTCCCATCTCTGCTGCTCAATGTGAAAGAGCCATTTCGGCCCAGAACAGAATCAAAAATGATTCACGCTCTTGTCTGGGTGGTCAAACACTGGAAGAATTGATGAGGATCTCACTGGAGGGTCCTTCTCTCGCACACTTTGACCCTGAACCAGCGGTAAAGGCCTGGTTTCAGGCGTCGAAAAGATCACGAAGGCCCTTTCTTAGATCTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF19047 all species →	HOOK_N	HOOK domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047273 all species →	Domain	Vertnin-like, ovarian tumor domain	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR006580 all species →	Domain	Zinc finger, TTF-type	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR043936 all species →	Domain	HOOK, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46880 all species →	RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0030705 all species →	Biological Process	cytoskeleton-dependent intracellular transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_13248.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.