Gene detail

Detailed information of evm.model.contig_14363.1 in Platygyra sinensis

Genomic Location: contig_14363:222...9465
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_14363.1

ATGCTAGACTTCGAGATTATGGACAAAGCGCTTAAAGTCGCGTGGATCGAGCGGTTAAAGACACATTCCAGTGCATCGTGGAAAATAATCCCAGAGTTGGGTGTGAAACAATACGGAGGCCTAACCTTTCTAATTAAGTGTCAGTATGACATTAAGATGCTGTCCCTTGACAATCTGCCAAATTTTTACCATACGCTACTAGCATACTTGCAAGACTTGAATTCCATAATAACGGTAGATGTAGATAATGTACCAGATAAAATTATCTGGAACAACCAGAATATAGTAATCAACGGGAAATCTATTTTCTATAGTTCTTGGTTTAACAAAGGCATCATCAGCATCCGCAGCTTGATGACGGAGAACAACCAGTTCCTCTCCTTACCCGAATTAAGACAAAAGTTCAATTTGGAGATCCCCTTCACCCTCTACTACGGGCTTGTATCCGCCATCCCTAAAGAATGGAAGTCTTCTTTAAAAAGTACCCTCCCCAGGGACAATGACATCTTTGAAAAGGCCACATGTTCTATTAAACCGCTGACTACTCGCGCCACCTATTCTGCTTTCCTAAGTACGATGGCTACCTCTCCAACTTGCGAAAGTAAGATTTTTAAGCACGGTTTTACAAAAGAAAATATTCAAAATGTATATTTACTTCCTTTTACAACCACTAAGGATGTAAAACTAATCACGTTTCAATACAAAGTAATTCATAACATCCTTCCTAATCAAGTCAGCCTATTCCGTGCTGGTATAGCTAATGACGACACTTGTCCACTGTGTAACGCTGAAAAACAAACCAGCAATCACATGCTTTACAGCTGTCCCGAAACCACCATGTTTTGGGGTCAGTTCACCGACTGGTGGTCAAAGCATGGCGTAACTAACTACATTCCAGAGAAGTTCCTGGATGATTTTCTTGACCTGATAATATGGGGACATGAACATGAGTGTATTATAGACCCCAAGAATGTCGAGGACCCAAACCTGTCATTTTACATCAGCCAACCAGGCTCAAGTGTTGCCACTTCCCTCTCTGAAGGAGAAGCAAAACCTAAACATGTAGGAATTCTTGAAATAAAAGAGAACAAACTCTTCAAAATCACCAAGGTTAAACTTAAGACTGTTCGTCCTTTTTATATGGAAGATGTGGTTTTAAAGGACACTGACATTGATCCTACTCAAGAGGATGTCATGATGGCATTCCTGGTAGATAAGGTGGAGCAGTTGATTGACAAGGCTAAACGTGAGCACACTGGTAATCCTCGACAACCTGACAAGCCCCTCATTAGGATACGGGTAGATTACAGTGATGGATTCACAGCGTTTAACATCAGAAGATTTGGACAACAGTTTGTTGACAGAGTGGCCAATCCAAAAGATATTTTACTCTTTTACAGGGGAAAGAAACAAGGGAAAAAAGATAAAAAGACTCAGGAAGACATTGGAGTCCCTCACCTTCGTCCTGAGGTGCTGGACACAATAAGAATGGAAGATTTGATCAAGGAGTACCTGACGTCGAAGGAAAATGCTTTGGAGTTACGCATTTTAACAGAGGGGAGAATGGCTCAGGCCCTGCGTGAATTTGTTGAGAAAGATGAAAAGGAAGCTATATCCACATTGGTTAAGTGGCAGTTAAATCAAGCACAGGAACATCTGAAGAAACGTCGAAATATTCGTGAGGACGATATTGAAGTTGAAGTACGAAAACATACAGAAGAAGTACGACAGAACGAAGAAGAAAATGAAGACAATGATGTGGAAGATATAAGAAAGGTCCTGGAGGAGTCACGTGCTAGCCAACCAAGAAATGAAACTAACGATGTTGATATGAGTGGGAGTGACAATGAGGATGGAACAGCTGGGCCAACTACTAGCAGAGAGGTACAGGTAGAGGAAGAGGCAGAGGAAGAGGAAGAGGAAGAGGTGGGCGTGGCCAAGGAAGAGGGGCAGCACAAACCGCTGCCAACACCTCAAGGAGTATCATCGATTGTTCATTTTCACACAGATCAAACTTACTTTCATATGAGAGGTTTCATACAAGCTCTGGCCCATTATGGTCTTAAAAATTACTCTGATGTAAGCAGATTTATTGTTTTGGTTGGGATGGGTGGAGAAAGGGGGCGGGGAGGTGCTTTCTTCACAACCACAAAGAAAAATGCCACAGTTCTTATACAGGAAATAATTTCTGATGATGATGACGATGAAGAGTTTAACATTCCTTTGTCATCTTCTGTAAAAAAGACAAAGACTACACAGCCAACATCCCAAAGGTTAACAGGAGCCAGAAGCAAAAGATCTGTTGTCAGCACTCAGAATGATCAGTGGTACAGTGTTACTCAGTTTAGAGAAAGCATTCAACATTTAGTGGTGAAGGCCTCATGGATAACTCTGGAATGA

Transcript

evm.model.contig_14363.1

ATGCTAGACTTCGAGATTATGGACAAAGCGCTTAAAGTCGCGTGGATCGAGCGGTTAAAGACACATTCCAGTGCATCGTGGAAAATAATCCCAGAGTTGGGTGTGAAACAATACGGAGGCCTAACCTTTCTAATTAAGTGTCAGTATGACATTAAGATGCTGTCCCTTGACAATCTGCCAAATTTTTACCATACGCTACTAGCATACTTGCAAGACTTGAATTCCATAATAACGGTAGATGTAGATAATGTACCAGATAAAATTATCTGGAACAACCAGAATATAGTAATCAACGGGAAATCTATTTTCTATAGTTCTTGGTTTAACAAAGGCATCATCAGCATCCGCAGCTTGATGACGGAGAACAACCAGTTCCTCTCCTTACCCGAATTAAGACAAAAGTTCAATTTGGAGATCCCCTTCACCCTCTACTACGGGCTTGTATCCGCCATCCCTAAAGAATGGAAGTCTTCTTTAAAAAGTACCCTCCCCAGGGACAATGACATCTTTGAAAAGGCCACATGTTCTATTAAACCGCTGACTACTCGCGCCACCTATTCTGCTTTCCTAAGTACGATGGCTACCTCTCCAACTTGCGAAAGTAAGATTTTTAAGCACGgttttacaaaagaaaatattcaaaatgtatATTTACTTCCTTTTACAACCACTAAGGATGTAAAACTAATCACGTTTCAATACAAAGTAATTCATAACATCCTTCCTAATCAAGTCAGCCTATTCCGTGCTGGTATAGCTAATGACGACACTTGTCCACTGTGTAACGCTGAAAAACAAACCAGCAATCACATGCTTTACAGCTGTCCCGAAACCACCATGTTTTGGGGTCAGTTCACCGACTGGTGGTCAAAGCATGGCGTAACTAACTACATTCCAGAGAAGTTCCTGGATGATTTTCTTGACCTGATAATATGGGGACATGAACATGAGTGTATTATAGACCCCAAGAATGTCGAGGACCCAAACCTGTCATTTTACATCAGCCAACCAGGCTCAAGTGTTGCCACTTCCCTCTCTGAAGGAGAAGCAAAACCTAAACATGTAGGAATTCTTGAAATAAAAGAGAACAAACTCTTCAAAATCACCAAGGTTAAACTTAAGACTGTTCGTCCTTTTTATATGGAAGATGTGGTTTTAAAGGACACTGACATTGATCCTACTCAAGAGGATGTCATGATGGCATTCCTGGTAGATAAGGTGGAGCAGTTGATTGACAAGGCTAAACGTGAGCACACTGGTAATCCTCGACAACCTGACAAGCCCCTCATTAGGATACGGGTAGATTACAGTGATGGATTCACAGCGTTTAACATCAGAAGATTTGGACAACAGTTTGTTGACAGAGTGGCCAATCCAAAAGATATTTTACTCTTTTACAGGGGAAAGAAACAAGGGAAAAAagATAAAAAGACTCAGGAAGACATTGGAGTCCCTCACCTTCGTCCTGAGGTGCTGGACACAATAAGAATGGAAGATTTGATCAAGGAGTACCTGACGTCGAAGGAAAATGCTTTGGAGTTACGCATTTTAACAGAGGGGAGAATGGCTCAGGCCCTGCGTGAATTTGTTGAGAAAGATGAAAAGGAAGCTATATCCACATTGGTTAAGTGGCAGTTAAATCAAGCACAGGAACATCTGAAGAAACGTCGAAATATTCGTGAGGACGATATTGAAGTTGAAGTACGAAAACATACAGAAGAAGTACGACAGAACGAAGAAGAAAATGAAGACAATGATGTGGAAGATATAAGAAAGGTCCTGGAGGAGTCACGTGCTAGCCAACCAAGAAATGAAACTAACGATGTTGATATGAGTGGGAGTGACAATGAGGATGGAACAGCTGGGCCAACTACTAGCAGAGAGGTACAGGTAGAGGAAGAGgcagaggaagaggaagaggaagaggtgGGCGTGGCCAAGGAAGAGGGGCAGCACAAACCGCTGCCAACACCTCAAGGAGTATCATCGATTGTTCATTTTCACACAGATCAAACTTACTTTCATATGAGAGGTTTCATACAAGCTCTGGCCCATTATGGTCTTAAAAATTACTCTGATGTAAGCAGATTTATTGTTTTGGTTGGGATGGGTGGAGAAAGGGGGCGGGGAGGTGCTTTCTTCACAAccacaaagaaaaatgccaCAGTTCTTATACAGGAAATAATttctgatgatgatgacgatgaagagtttaacattcctttgtcaTCTTCTGTAAAAAAGACAAAGACTACACAGCCAACATCCCAAAGGTTAACAGGAGCCAGAAGCAAAAGATCTGTTGTCAGCACTCAGAATGATCAGTGGTACAGTGTTACTCAGTTTAGAGAAAGCATTCAACATTTAGTGGTGAAGGCCTCATGGATAACTCTGGAatga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13966 all species →	zf-RVT	zinc-binding in reverse transcriptase	Domain	Interproscan
PF04152 all species →	Mre11_DNA_bind	Mre11 DNA-binding presumed domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038487 all species →	Homologous_superfamily	Mre11, capping domain	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR026960 all species →	Domain	Reverse transcriptase zinc-binding domain	Interproscan
IPR007281 all species →	Domain	Mre11, DNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10139 all species →	DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000014 all species →	Molecular Function	single-stranded DNA endodeoxyribonuclease activity	Interproscan
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0007095 all species →	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0030870 all species →	Cellular Component	Mre11 complex	Interproscan
GO:0031573 all species →	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan
GO:0042138 all species →	Biological Process	meiotic DNA double-strand break formation	Interproscan
GO:0097552 all species →	Biological Process	mitochondrial double-strand break repair via homologous recombination	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_14363.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.