Gene detail

Detailed information of evm.model.contig_15265.2 in Platygyra sinensis

Genomic Location: contig_15265:4666...30468
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_15265.2

ATGGCTAAGATGACGAGCAAGTCGATAATATCGATATTGACAGCGTTTCTCGCTTTCCTATTGATAGAAGCTACAAACCCTGGAGTCCGCTTTCGCATCACTGCCAAAGGTCTGCAATATGTTGACTCAATAGCCGTCCAAGTTCTCGAAGAGAAAATCAAGACAGAGAGTATACCGGACATATCTGGAGATGCTGATACACCAGTTGGCCATGTCTCCTACTCACTTTCAAGCATACATTTCAATTCTCTGTCAATCCCATCATCGGCTTTTAAAACGGTTCCGGGCGTTGGACTTGAGCTCCAGATCTCTGGCGCTTCCACTTCCCTGAACGGAGACTGGCACTATCGAGAAGACCACTGGCCACATATTAGTGGCGGTGGCAGTTTCGATTTGGACGTGAGTGGGCTTACTCTGTCACTTAGTATGAAACTTGGAGCTGACAGCACAGGTCACCCAACTATTTCCGCAGCTAGTTGTTCCAGTTCAATAGGAGACGTGAACATACATTTTCATGGTGGTGCAAGTTGGCTTTACAACCTTTTCGATAGCTACATCGACAAGAAAATTAGAGAAACATTGCAGGACAAGCTGTGCCAGGAGACATCAGATCTGATAAATATCAATGCAGAAAAGGCACTTTCAACTTTTCCAGTTAAAAAGGCAATCGACAAATATGCTCTCATAAACTACTCACTGGTTTCAAATCCTAACGTCACTGAGTCGTACATGGACCTCTTCATTAAGGGAGAGTTTCAATCAACTACGGCACCAAAAGAGGCTCCGTTTTCTCCTGCACCACTCCCCACTGATTCAGAGTCAGCTAAGATGGTGTACATCTGGGTAACCGACTACTTACTGAACACAGCTGGGCTTGTTTATCAAGATGCAGGAATACTCAATGAGACTGTCACCCCGTCAAAGATGGCAGCCAAAGTACAACCTGCTGATGGTTCTGAGCAAGTTATTCCAAGCCGAAGGAAGGAAAGCATCGGTGAAATGTTTCTACCAAAGGACACACTCGACCAGCCATGCGATGTTGTTTTGATAGTCAAAGATGGCACAGAATTCAAAGCTCACAGACGAGTTCTCTCAGAGACCAGTCCTTTCTTTCAAAAGCTGCTGATTAGCGACATGAAGGAGACTCAAGAAGGAGTAGTTCGGTTGGAGATGTTTACCGAGTCAATCACGGCGACCACACTACAGGAGGTTGAAACGTTGATTTCAAGTGATGAAATAGATGTTACCGCCGAGGAAGATGTGTTTAAGATCGTTTTAGCATGGACTGACTATGACAGTAGCCGGCGAAGGAGATATTTCGTCGAGTTATTTCGTCACGTTCGGCTTTTTTATGGATCGCCTGACTTTCTACGGCATGATATCGTGACGAATGAGCTTGTAAAAAACAGTAACAGCTGTCTGACGCTGGTAAAGGATGCCATCAACTTACTTGAATCTAAAAGCTACGATAGCCTCAGTGTCCCACCCAGGAAGTCGCTGAAGACCTCTGTCATAGTGATCAATGTGAGTAATGATATCTTGTGCTGCTTTCCTAGCGAGAATAGCTGGTGTAAGTTAGGTGAGTTATCAGATGATGTTAATACCATTGACAAATTTGTGCCTTGTGGTGGTCAGTTGTATGGTGCTGTACAGGAGTCGTCGTACGATCGACCTCAGTGTATAAAACAGATAAAGCATAATCCGCTCTCTAACAGTTGGATGCAATTACCATCCTTGAAAGAACCGGGACGATATTTGAGAAAAACGTTTGTTGGAAATGGAGATGAAATGTACGCTTTGATGTCTGAACCATGTGTTTTGGACCATTTACTACACCAGATCCGCGTAGGACGCCGCGACTGTGAAAGCCGGAAACATACTTCCTTCCTTGTGAAACTCAAACCGGAATTAAACTCTTGGGAGGATCTATCATCATTTAATCATTTGGACCTGAGACATTTTTTCTGCATTGTAACCAACGACAATTTTATTTATTTCATCGGTGGCAGTGAGTGGTGTTGTAACAAGTTCAAGTTGCTTTGCGATGTTGACAGGTATGACTTGAGCAAAAACCAATGGGAGAAAGTAGCGGACATTCAAATGGCGAGAGTGCGGGTTATGGGTGCTGCTGTGAACAAATAA

Transcript

evm.model.contig_15265.2

ATGGCTAAGATGACGAGCAAGTCGATAATATCGATATTGACAGCGTTTCTCGCTTTCCTATTGATAGAAGCTACAAACCCTGGAGTCCGCTTTCGCATCACTGCCAAAGGTCTGCAATATGTTGACTCAATAGCCGTCCAAGTTCTCGAAGAGAAAATCAAGACAGAGAGTATACCGGACATATCTGGAGATGCTGATACACCAGTTGGCCATGTCTCCTACTCACTTTCAAGCATACATTTCAATTCTCTGTCAATCCCATCATCGGCTTTTAAAACGGTTCCGGGCGTTGGACTTGAGCTCCAGATCTCTGGCGCTTCCACTTCCCTGAACGGAGACTGGCACTATCGAGAAGACCACTGGCCACATATTAGTGGCGGTGGCAGTTTCGATTTGGACGTGAGTGGGCTTACTCTGTCACTTAGTATGAAACTTGGAGCTGACAGCACAGGTCACCCAACTATTTCCGCAGCTAGTTGTTCCAGTTCAATAGGAGACGTGAACATACATTTTCATGGTGGTGCAAGTTGGCTTTACAACCTTTTCGATAGCTACATCGACAAGAAAATTAGAGAAACATTGCAGGACAAGCTGTGCCAGGAGACATCAGATCTGATAAATATCAATGCAGAAAAGGCACtttcaacttttccagTTAAAAAGGCAATCGACAAATATGCTCTCATAAACTACTCACTGGTTTCAAATCCTAACGTCACTGAGTCGTACATGGACCTCTTCATTAAGGGAGAGTTTCAATCAACTACGGCACCAAAAGAGGCTCCGTTTTCTCCTGCACCACTCCCCACTGATTCAGAGTCAGCTAAGATGGTGTACATCTGGGTAACCGACTACTTACTGAACACAGCTGGGCTTGTTTATCAAGATGCAGGAATACTCAATGAGACTGTCACCCCGTcaaagATGGCAGCCAAAGTACAACCTGCTGATGGTTCTGAGCAAGTTATTCCAAGCCGAAGGAAGGAAAGCATCGGTGAAATGTTTCTACCAAAGGACACACTCGACCAGCCATGCGATGTTGTTTTGATAGTCAAAGATGGCACAGAATTCAAAGCTCACAGACGAGTTCTCTCAGAGACCAgtcctttctttcaaaagctGCTGATTAGCGACATGAAGGAGACTCAAGAAGGAGTAGTTCGGTTGGAGATGTTTACCGAGTCAATCACGGCGACCACACTACAGGAGGTTGAAACGTTGATTTCAAGTGATGAAATAGATGTTACCGCCGAGGAAGATGTGTTTAAGATCGTTTTAGCATGGACTGACTATGACAGTAGCCGGCGAAGGAGATATTTCGTCGAGTTATTTCGTCACGTTCGGCTTTTTTATGGATCGCCTGACTTTCTACGGCATGATATCGTGACGAATGAGCTTGTAAAAAACAGTAACAGCTGTCTGACGCTGGTAAAGGATGCCATCAACTTACTTGAATCTAAAAGCTACGATAGCCTCAGTGTCCCACCCAGGAAGTCGCTGAAGACCTCTGTCATAGTGATCAATGTGAGTAATGATATCTTGTGCTGCTTTCCTAGCGAGAATAGCTGGTGTAAGTTAGGTGAGTTATCAGATGATGTTAATACCATTGACAAATTTGTGCCTTGTGGTGGTCAGTTGTATGGTGCTGTACAGGAGTCGTCGTACGATCGACCTCAGTGTATAAAACAGATAAAGCATAATCCGCTCTCTAACAGTTGGATGCAATTACCATCCTTGAAAGAACCGGGACGATATTTGAGAAAAACGTTTGTTGGAAATGGAGATGAAATGTACGCTTTGATGTCTGAACCATGTGTTTTGGACCATTTACTACACCAGATCCGCGTAGGACGCCGCGACTGTGAAAGCCGGAAACATACTTCCTTCCTTGTGAAACTCAAACCGGAATTAAACTCTTGGGAGGATCTATCATCATTTAATCATTTGGACCTGAGACATTTTTTCTGCATTGTAACCAACgacaattttatttatttcatcggTGGCAGTGAGTGGTGTTGTAACAAGTTCAAGTTGCTTTGCGATGTTGACAGGTATGACTTGAGCAAAAACCAATGGGAGAAAGTAGCGGACATTCAAATGGCGAGAGTGCGGGTTATGGGTGCTGCTGTGAACAAATAA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01273 all species →	LBP_BPI_CETP	LBP / BPI / CETP family, N-terminal domain	Family	Interproscan
PF13418 all species →	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF02886 all species →	LBP_BPI_CETP_C	LBP / BPI / CETP family, C-terminal domain	Domain	Interproscan
PF07707 all species →	BACK	BTB And C-terminal Kelch	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017943 all species →	Homologous_superfamily	Bactericidal permeability-increasing protein, alpha/beta domain superfamily	Interproscan
IPR011705 all species →	Domain	BTB/Kelch-associated	Interproscan
IPR017942 all species →	Domain	Lipid-binding serum glycoprotein, N-terminal	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR001124 all species →	Domain	Lipid-binding serum glycoprotein, C-terminal	Interproscan
IPR032942 all species →	Family	BPI/LBP/Plunc family	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10504 all species →	BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_15265.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.