Gene detail

Detailed information of evm.model.contig_16296.3 in Platygyra sinensis

Genomic Location: contig_16296:24592...27726
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_16296.3

ATGGAAGTTTTGAAACAGTTTATAACTCCTTCTCGCTTCAGTTTGTTTGGTTATATCGTCGCAGTCCTGTTTGTCTTGACGGCAGCCGTGTTTGTAGGAATCACAAGTAAGTCAAGACTCAACGAACGCAGGACTTTCCTTTGCAATTTCCAAGCTACCATACCCGACAAGAATTTTCATCAAGCTCAATGTTTTGAGAAGTACGAGGAACAGTACAATTCTCCTCTGCCATGGTATCTGTTTGTCCTTTTGACATTTGCTGCTGTGATCGTGTTGTGTCTCGCTTACTCGTGGTGTTGTGTGAAATCTCGGGTTGAACAGCTTCAAGCCGCGATGGCACCCGATGCGGAAAACCCTCGCCCAAGGCCGAGAATAAGAACTCGTCGAGTTTTCCTTATTTATTTCCTTCATCTAGCGACGCGCTTAGTCTTAGGGATTGCGTTTACACTGATGCAAAACTTCGTGTTGTATCCAGGTGGCTTTCCGACCGGATATGCTTGCGTTTTATCAACGACGAGTTCATTTAATACCAGCGCTCCTTCAAAAACAGTCTCGCACACATCAAACTGCCACAATTCTGTTGCATCTGAAAAGAACAGCTCTATGAAAATAGTTTTAGTAGTTAACATTATTTTCAACTGCCTCGTGTTCGGAGAAATCATTTATCTTCTAGCACGCGCATCACATAGTCGTAAGTTCACGTTTGATTCAGAATTCTGTTCAAAGTATTTTTTCCACGAAAGCTCAACTCAAGTGACGCCAGCTGGTTTCAGGAAATCCATGAAAAAACTGATCTTACAAGAAACAGAATTTCTAGAGCCACTGATTCATTGTAGCGCAGAAGAAGAGGAAGGCAACATACTCTTAGATGACGTCTTTGTGGACGTGATCATTTACAGCGGAAGGGCAAAAGACAAGTTTTTGAAGGATTGCGAAAGACACCAAATATACGACTCTTACTTAAAACCTGAAAGCCAGCATGGATCCATTGCAATAAAAACGCGCGGAGAGTTGTTTCTGTCCAACAAAGACACTCGAAACCCTCGGAAAATTCTCATCGTTGGTCGCCCGGGGATCGGAAAGTCTTTGTTCTGTCAGAAACTCTTGCGTGACTGGAGTAAACGGGACCTTTTCCATGATAACAGCAAAAATTTCAAGTACGCTTTCTTGTTCCGGTTTCGCTCGTTTTATTCGGAAACATCAGGGAATATTTCCCTTGGGCAGTTGTTGAACCGCACCGCATATTCAGCCTGTCAAAGGGATGGTCAGGTTTTTCAAGAAGTGTTGGATCATCCTGAGGAAATACTTCTTGTATTTGACGGCTTAGACGAATTTAAGGATCACGATAGCTGCACGACGAACGAGGCGGCACGATTCGGAAATAGCCCAAGCGAGGAAATGCCATTACCAGCACTATACGTGAAACTTCTGCAGGGAAAACTCCTTCCTGGAGCAACCTTGTTGACAAGTTGCAGGCCGACTGTGCTCGGAAGTGTTGAGGTCCATCTGTTTGACAGGACTGTGGAAATAATGGGCTTTACAGAAGAGAAAGTTCACAAGTATGTGAACAACTATTGTAAAGGAGAAAGGGCGATAGCAACACGAATATGGGAGCACATCTACAGCAATTTGAACCTGTTGTCGTTATGCTACATTCCTGTTAATTGTCGCATAATGTGTTTCTTTCTAAAGGAGTTAATAAAGCTTTGTGCCCTGGGATCAGAAATCGTCATCTTCCCGACAAGGCTCACGGAAGTCTACCAAGGAGCTTTGAGATTGTTCATCTTTAAGCATCACCCAGAATTTCGCGATAAACCATTTCGAGGAAATGAACGCTTTTCAGATTCGGTTGAAAAGACCTTGACAGACCTAGGGTCGTTAGCAAGAAAGGGAATAGCGGAAGGACGACTGATATTCGACTCAGAAGAAGTGTCGGGAATGATACATTGTGGTTTGTTGAATCAATTGCCTGACAGCAGGTTGTCTCCGGTGGAGTTCAAACAACGTTTTTGCTTCATTCACTTAACTTTACAAGAGTTTCTGGCCGCTAGAGAGATTGCCAAGATGGATCCCGATGACCTCAAAGAATTCATTACGTCCAATGCGGAAGATCCAAAGTGGCATTTGGTCATTCAATTTGTCGCTGGGTTACTTTGTGGCCAGCAAAATGACGCAGTCAGCAGCTTTGTTGAGTGCCTTCATGACTCTTTGCTGTCGAATCCACAGAACAAAAAGATGTCTTTACTCATGACGAAGTGTTTGTATGAGTACAATGACGATGCCACAGTGAAGAGCGCAGCTTCTCAGCTTCAGCGGAATGGACGTTTTCGCAATTCTTTTGAGTGGTGGAATTGCCAAATGACACCTGTTGACTGCACAGCAATTGTGTACTTCTTAAGAAACATTGAGCAGGTGAATTACTCACTCTACCTCGGTGCCAATTCTCTAGGAGAAGGGGGATGTAAAGAATTAGTCAAGCTGCTAATTGAAGGAGGCCCAGTTAAATTACACCTAAGAAAAAACAACCTAACCGACCAGGGTTTGATTTCTGTGATAAGAGCTATCAGTGCGGAAAAGTGTAAACTCCAGAAGTTGAGCCTTGGTTTGAACGACTTAATCAGTCCAGATGCATTGGTCCTCCTTTGCAAATCATTAAAAACCAAAAGTTGTAAGCTCACTCGCTTGCAACTTGGCGGATTGCAAATAACTGAACTCGTCTTGTCACACTTGTGTGAATCACTGGAACACGCAAATTGCAAAATCACCAACTTGAAGTTCAACGACGAGGAACTCTGGACCGACGCGGTTTTGTTGAAGTTCTGTCAAACACTCAAACACCAAAATTGCCAGCTGAGCTCGTTGAGAATTGAGTGTCACAAAATTACTAACCAAGGTGTTCAACATTTCTGCGAAACACTAGAGAGCGAACATTGCAAACTCGAGAAGCTGGAGCTGATTAGCAATCGAATGACCGCTGTGGTGGTGCCTTTCATGCGAAGATCATTGAGTCACCCGAATTGTAAACTCTGTAAATTAAACATTATATCTTGGAACTTGAATCAGCAAGTCAAGAGAGACCTGGATGAGGCAGTTCAAGCAGCCTGCCACCAACGCAACGCTCATTCCACGATATAA

Transcript

evm.model.contig_16296.3

ATGGAAGTTTTGAAACAGTTTATAACTCCTTCTCGCTTCAGTTTGTTTGGTTATATCGTCGCAGTCCTGTTTGTCTTGACGGCAGCCGTGTTTGTAGGAATCACAAGTAAGTCAAGACTCAACGAACGCAGGACTTTCCTTTGCAATTTCCAAGCTACCATACCCGACAAGAATTTTCATCAAGCTCAATGTTTTGAGAAGTACGAGGAACAGTACAATTCTCCTCTGCCATGGTATCTGTTTGTCCTTTTGACATTTGCTGCTGTGATCGTGTTGTGTCTCGCTTACTCGTGGTGTTGTGTGAAATCTCGGGTTGAACAGCTTCAAGCCGCGATGGCACCCGATGCGGAAAACCCTCGCCCAAGGCCGAGAATAAGAACTCGTCGagttttccttatttatttccTTCATCTAGCGACGCGCTTAGTCTTAGGGATTGCGTTTACACTGATGCAAAACTTCGTGTTGTATCCAGGTGGCTTTCCGACCGGATATGCTTGCGTTTTATCAACGACGAGTTCATTTAATACCAGCGCTCCTTCAAAAACAGTCTCGCACACATCAAACTGCCACAATTCTGTTGCATCTGAAAAGAACAGCTCTATGAAAATAGTTTTAGTAGTTAACATTATTTTCAACTGCCTCGTGTTCGGAGAAATCATTTATCTTCTAGCACGCGCATCACATAGTCGTAAGTTCACGTTTGATTCAGAATTCTGTTCAAAGTATTTTTTCCACGAAAGCTCAACTCAAGTGACGCCAGCTGGTTTCAGGAAATCCATGAAAAAACTGATCTTACAAGAAACAGAATTTCTAGAGCCACTGATTCATTGTAGCGCAGAAGAAGAGGAAGGCAACATACTCTTAGATGACGTCTTTGTGGACGTGATCATTTACAGCGGAAGGGCAAAAGACAAGTTTTTGAAGGATTGCGAAAGACACCAAATATACGACTCTTACTTAAAACCTGAAAGCCAGCATGGATCCATTGCAATAAAAACGCGCGGAGAGTTGTTTCTGTCCAACAAAGACACTCGAAACCCTCGGAAAATTCTCATCGTTGGTCGCCCGGGGATCGGAAAGTCTTTGTTCTGTCAGAAACTCTTGCGTGACTGGAGTAAACGGGACCTTTTCCATGATAACAGCAAAAATTTCAAGTACGCTTTCTTGTTCCGGTTTCGCTCGTTTTATTCGGAAACATCAGGGAATATTTCCCTTGGGCAGTTGTTGAACCGCACCGCATATTCAGCCTGTCAAAGGGATGGTCAGGTTTTTCAAGAAGTGTTGGATCATCCTGAGGAAATACTTCTTGTATTTGACGGCTTAGACGAATTTAAGGATCACGATAGCTGCACGACGAACGAGGCGGCACGATTCGGAAATAGCCCAAGCGAGGAAATGCCATTACCAGCACTATACGTGAAACTTCTGCAGGGAAAACTCCTTCCTGGAGCAACCTTGTTGACAAGTTGCAGGCCGACTGTGCTCGGAAGTGTTGAGGTCCATCTGTTTGACAGGACTGTGGAAATAATGGGCTTTACAGAAGAGAAAGTTCACAAGTATGTGAACAACTATTGTAAAGGAGAAAGGGCGATAGCAACACGAATATGGGAGCACATCTACAGCAATTTGAACCTGTTGTCGTTATGCTACATTCCTGTTAATTGTCGCATAATGTGTTTCTTTCTAAAGGAGTTAATAAAGCTTTGTGCCCTGGGATCAGAAATCGTCATCTTCCCGACAAGGCTCACGGAAGTCTACCAAGGAGCTTTGAGATTGTTCATCTTTAAGCATCACCCAGAATTTCGCGATAAACCATTTCGAGGAAATGAACGCTTTTCAGATTCGGTTGAAAAGACCTTGACAGACCTAGGGTCGTTAGCAAGAAAGGGAATAGCGGAAGGACGACTGATATTCGACTCAGAAGAAGTGTCGGGAATGATACATTGTGGTTTGTTGAATCAATTGCCTGACAGCAGGTTGTCTCCGGTGGAGTTCAAACAACGTTTTTGCTTCATTCACTTAACTTTACAAGAGTTTCTGGCCGCTAGAGAGATTGCCAAGATGGATCCCGATGACCTCAAAGAATTCATTACGTCCAATGCGGAAGATCCAAAGTGGCATTTGGTCATTCAATTTGTCGCTGGGTTACTTTGTGGCCAGCAAAATGACGCAGTCAGCAGCTTTGTTGAGTGCCTTCATGACTCTTTGCTGTCGAATCCACAGAACAAAAAGATGTCTTTACTCATGACGAAGTGTTTGTATGAGTACAATGACGATGCCACAGTGAAGAGCGCAGCTTCTCAGCTTCAGCGGAATGGACGTTTTCGCAATTCTTTTGAGTGGTGGAAttgccaaatgacacctgttgaCTGCACAGCAATTGTGTACTTCTTAAGAAACATTGAGCAGGTGAATTACTCACTCTACCTCGGTGCCAATTCTCTAGGAGAAGGGGGATGTAAAGAATTAGTCAAGCTGCTAATTGAAGGAGGCCCAGTTAAATTACACCTAAGAAAAAACAACCTAACCGACCAGGGTTTGATTTCTGTGATAAGAGCTATCAGTGCGGAAAAGTGTAAACTCCAGAAGTTGAGCCTTGGTTTGAACGACTTAATCAGTCCAGATGCATTGGTCCTCCTTTGCAAATCATTAAAAACCAAAAGTTGTAAGCTCACTCGCTTGCAACTTGGCGGATTGCAAATAACTGAACTCGTCTTGTCACACTTGTGTGAATCACTGGAACACGCAAATTGCAAAATCACCAACTTGAAGTTCAACGACGAGGAACTCTGGACCGACGCGGTTTTGTTGAAGTTCTGTCAAACACTCAAACACCAAAATTGCCAGCTGAGCTCGTTGAGAATTGAGTGTCACAAAATTACTAACCAAGGTGTTCAACATTTCTGCGAAACACTAGAGAGCGAACATTGCAAACTCGAGAAGCTGGAGCTGATTAGCAATCGAATGACCGCTGTGGTGGTGCCTTTCATGCGAAGATCATTGAGTCACCCGAATTGTAAACTCTGTAAATTAAACATTATATCTTGGAACTTGAATCAGCAAGTCAAGAGAGACCTGGATGAGGCAGTTCAAGCAGCCTGCCACCAACGCAACGCTCATTCCACGATATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR050637 all species →	Family	NLRP family, innate immunity and inflammation regulators	Interproscan
IPR038359 all species →	Homologous_superfamily	Connexin, N-terminal domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45690 all species →	NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0050727 all species →	Biological Process	regulation of inflammatory response	Interproscan
GO:0050729 all species →	Biological Process	positive regulation of inflammatory response	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_16296.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.