Detailed information of evm.model.contig_16343.1 in Platygyra sinensis

Genomic Location: contig_16343:4104...47408
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Ubiquitin familyUBD|Alpha-Helix|UBA · all ubiquitin genes in this species
Ubiquitin familyUBD|Alpha-Helix|UBM · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00627
all species →
UBAUBA/TS-N domainDomainInterproscan
PF06012
all species →
DUF908Domain of Unknown Function (DUF908)FamilyInterproscan
PF14377
all species →
UBMUbiquitin binding regionMotifInterproscan
PF06025
all species →
DUF913Domain of Unknown Function (DUF913)FamilyInterproscan
PF02825
all species →
WWEWWE domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015940
all species →
DomainUbiquitin-associated domainInterproscan
IPR009060
all species →
Homologous_superfamilyUBA-like superfamilyInterproscan
IPR018123
all species →
DomainWWE domain, subgroupInterproscan
IPR010309
all species →
DomainE3 ubiquitin ligase, domain of unknown function DUF908Interproscan
IPR025527
all species →
Conserved_siteHUWE1/REV1, ubiquitin-binding motifInterproscan
IPR010314
all species →
DomainE3 ubiquitin ligase, domain of unknown function DUF913Interproscan
IPR037197
all species →
Homologous_superfamilyWWE domain superfamilyInterproscan
IPR004170
all species →
DomainWWE domainInterproscan
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37888
all species →
DNA-BINDING BROMODOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.contig_16343.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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