Gene detail

Detailed information of evm.model.contig_16725.3 in Platygyra sinensis

Genomic Location: contig_16725:13594...31664
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_16725.3

ATGGATCAAAATAATATTGTTGCAGCATGTGGTGAGAGTGGGGACTGGTTTGAGCAGCTGTTGGAAAATTTGCTTCACAATGAGGAAGACTCTATTTCTAAAGCTTCAGAGGAGGCCAGTCGACAAATCGTTAATTGTCTGGTTGAGAATGTGTTGAGTTTGGAAGAGAGAGCAGTTGCCCAGTCTGAAGGCAAAGGCTCAAGCAGCCAAAGACTTGTGTCAAGCTTGTCTACATTGTACCTGATAAGCAAGATCAAACCACAGCTGTTAGTGAAGCATTCCATGACATTACAGCCATACCTCAGTACAAAGTGCAGTACCCAGGGGGATTACCTTGTGATTCACAATGTAGCACGCATTTTGGAGCTTGTGGTTCCACTGATGGAGCATCCAAGTGAAACATTCCTGGCCAGTTTAGAGGAAGACTTGATGAGACTTACCGTCAAACATGGGCAAACGGTTGTTCAAAGTTGCATTAGTTGTTTAGGTGCTGTGGTAAATAAAGTCACCCATAACATCCGGCTCGTAAAGGACTACTTCCAAAAGTACCATGGCTACCTAGCAAAGTCCAAAGCAGATCTGTGCAAGAATCCTGGCAAGGCGCAGGTGAACAGACCAACTCTACTACGATCCTTGTTCACTCTTGGACTGCTCTGTAAGCAGTTCGATTTTGACAGCGATGTGAAACCAAAGAACGAGGGTTCCACTAAGGACAGAGTGTTTGCTGTGTACATCTACTTCACTAAACACACTGATGAAGAAGTTTGCCAAAAAGCCATTACAGGACTAGGGTTTCTTTGTATGAGGTATGGTGAATTGCTCCTGAAAGGAGAAGCCAAGGATCTCTACCAGGGAATCCTATCACAGCCCAATCAGCCTTTGAAGCTTAAACTTCAGGTATTAAAGAACTTGCAGACTCACCTTTTAGAAGAAGAGAAAAGACTCCACGTGCAAGATCATCACAGACATAGGAAAGCAGAAAAGGAAAAGGAAAATCAAAACCTCAAGGAGTTGGGGGATAGTCAGTCCGGTACAACTAGTGCAGTGATGCAGGTGTATCTAAAGAGTGTGCTGGAGAGCTTTTTACACCCTCAGCCTTCAGTGCGTATGGCTGCTCTTCACGTTGTGAATTTGATTCTGAGACAAGGTCTTGTTCATCCCGTACAGTGTGTTCCATATCTGATCGCCATTGGGACTGACGAAGAGCAACAAATGAGAGTAAAATCAGACCAACAGTTGTCAGAGATCGACAGCAAATATTCCATGTTTGTACAGATGAAAGCCCTGGCAGGAATAAAGATGTCGTTTGAACTTCAACGCCTAGTTCACAAGGACAAGACATCACTGATACGCGGATTCAGAAAAGATACAAACCAGTGTCTTTTAAGTCATTTATATTCCATCATACGAACTGGAAGACAGCCAAGGCGGTCGCTGTTACAGTCTATGCTGAGAATATTTGATGATCACAAGGGTGCCAAATTAGACCTTCTGCTGTACGTCGCCGACAACATGGCGCACTTCCCGTACTCTGTTCAAGAAGAGCCACTCTTTGTCATTTACCACATTGACAACATCCTGTCCGTGACAGGTGCAAATATGCTCCACTCCTTTAAAGAGGCTATGACTTCAAAAGTAACGCCAACTGTTGAAGGAGTTGACGATGTTCCTCCACCTTTAGAGAATGAGTTTGAAGAAGAAGAAACCCTCGAGTCTGTTTTAGCTCGGATTCCCCCAGACCCAACAATCTTCGAGCAATGTTGTGTTTCTTCACAAGGTTGCCTACTGCTTCTCTATTTAAAACAGCACCTAAAGGAACTGTATGCATTTTCAGACAGTAAATGTCACAAATACTCTCCATCCGAACCCACCAAGGCGTATGACAAGACTGTGTCAAGAAAAGTCGGGGTTGTATTTAATCCTGAGCAAGTCTTACGATACGTTGAAGAGCCAGAGGCTGTGAGAAGCCATGAGCAGTTAGTCCGCGACTACTTAGAGTTCAAATTTCTGATGATGAAGCTTGATCCATCTGAAGAAGACAGTGATGATTCTGGTAACGGTGGAAGAGACAGTCCTGTGGGAGAGGCGGGGCAGGTGACTGACCTTGAGGGAAATGTTAAAACTCCTAGTGGCAAACCACGAGACAAGCGCGCCCCTAAACCAAGAAAGGTCGTCAAGGGTCGAAAAACTCCGCCAGCTGCACAGGCAAAGGCAAGGACAAAACCCAAAGGAAAGAGACCTAGGAAGAAAATAATATCCTTTGATTTTTGTTATGTCAGTCCTTAG

Transcript

evm.model.contig_16725.3

atggatcaaaataatattGTTGCAGCATGTGGTGAGAGTGGGGACTGGTTTGAGCAGCTGTTGGAAAATTTGCTTCACAATGAGGAAGACTCTATTTCTAAAGCTTCAGAGGAGGCCAGTCGACAAATCGTTAATTGTCTGGTTGAGAATGTGTTGAGTTTGGAAGAGAGAGCAGTTGCCCAGTCTGAAGGCAAAGGCTCAAGCAGCCAAAGACTTGTGTCAAGCTTGTCTACATTGTACCTGATAAGCAAGATCAAACCACAGCTGTTAGTGAAGCATTCCATGACATTACAGCCATACCTCAGTACAAAGTGCAGTACCCAGGGGGATTACCTTGTGATTCACAATGTAGCACGCATTTTGGAGCTTGTGGTTCCACTGATGGAGCATCCAAGTGAAACATTCCTGGCCAGTTTAGAGGAAGACTTGATGAGACTTACCGTCAAACATGGGCAAACGGTTGTTCAAAGTTGCATTAGTTGTTTAGGTGCTGTGGTAAATAAAGTCACCCATAACATCCGGCTCGTAAAGGACTACTTCCAAAAGTACCATGGCTACCTAGCAAAGTCCAAAGCAGATCTGTGCAAGAATCCTGGCAAGGCGCAGGTGAACAGACCAACTCTACTACGATCCTTGTTCACTCTTGGACTGCTCTGTAAGCAGTTCGATTTTGACAGCGATGTGAAACCAAAGAACGAGGGTTCCACTAAGGACAGAGTGTTTGCTGTGTACATCTACTTCACTAAACACACTGATGAAGAAGTTTGCCAAAAAGCCATTACAGGACTAGGGTTTCTTTGTATGAGGTATGGTGAATTGCTCCTGAAAGGAGAAGCCAAGGATCTCTACCAGGGAATCCTATCACAGCCCAATCAGCCTTTGAAGCTTAAACTTCAGGTATTAAAGAACTTGCAGACTCACCTTTTAGAAGAAGAGAAAAGACTCCACGTGCAAGATCATCACAGACATAGGAAAgcagaaaaggaaaaggaaaatcaAAACCTCAAGGAGTTGGGGGATAGTCAGTCCGGTACAACTAGTGCAGTGATGCAGGTGTATCTAAAGAGTGTGCTGGAGAGCTTTTTACACCCTCAGCCTTCAGTGCGTATGGCTGCTCTTCACGTTGTGAATTTGATTCTGAGACAAGGTCTTGTTCATCCCGTACAGTGTGTTCCATATCTGATCGCCATTGGGACTGACGAAGAGCAACAAATGAGAGTAAAATCAGACCAACAGTTGTCAGAGATCGACAGCAAATATTCCATGTTTGTACAGATGAAAGCCCTGGCAGGAATAAAGATGTCGTTTGAACTTCAACGCCTAGTTCACAAGGACAAGACATCACTGATACGCGGATTCAGAAAAGATACAAACCAGTGTCTTTTAAGTCATTTATATTCCATCATACGAACTGGAAGACAGCCAAGGCGGTCGCTGTTACAGTCTATGCTGAGAATATTTGATGATCACAAGGGTGCCAAATTAGACCTTCTGCTGTACGTCGCCGACAACATGGCGCACTTCCCGTACTCTGTTCAAGAAGAGCCACTCTTTGTCATTTACCACATTGACAACATCCTGTCCGTGACAGGTGCAAATATGCTCCACTCCTTTAAAGAGgCTATGACTTCAAAAGTAACGCCAACTGTTGAAGGAGTTGACGATGTTCCTCCACCTTTAGAGAATGAgtttgaagaagaagaaacccTCGAGTCTGTTTTAGCTCGGATTCCCCCAGACCCAACAATCTTCGAGCAATGTTGTGTTTCTTCACAAGGTTGCCTACTGCTTCTCTATTTAAAACAGCACCTAAAGGAACTGTATGCATTTTCAGACAGTAAATGTCACAAATACTCTCCATCCGAACCCACCAAGGCGTATGACAAGACTGTGTCAAGAAAAGTCGGGGTTGTATTTAATCCTGAGCAAGTCTTACGATACGTTGAAGAGCCAGAGGCTGTGAGAAGCCATGAGCAGTTAGTCCGCGACTACTTAGAGTTCAAATTTCTGATGATGAAGCTTGATCCATCTGAAGAAGACAGTGATGATTCTGGTAACGGTGGAAGAGACAGTCCTGTGGGAGAGGCGGGGCAGGTGACTGACCTTGAGGGAAATGTTAAAACTCCTAGTGGCAAACCACGAGACAAGCGCGCCCCTAAACCAAGAAAGGTCGTCAAGGGTCGAAAAACTCCGCCAGCTGCACAGGCAAAGGCAAGGACAAAACCCAAAGGAAAGAGACCTAGGAAGAAAATAATATCCTTTGATTTTTGTTATGTCAGTCCTTAG

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002809 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12830 all species →	Nipped-B_C	Sister chromatid cohesion C-terminus	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR024986 all species →	Domain	Sister chromatid cohesion C-terminal domain	Interproscan
IPR033031 all species →	Family	Scc2/Nipped-B family	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21704 all species →	NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0034087 all species →	Biological Process	establishment of mitotic sister chromatid cohesion	Interproscan
GO:0061780 all species →	Biological Process	obsolete mitotic cohesin loading	Interproscan
GO:0071169 all species →	Biological Process	establishment of protein localization to chromatin	Interproscan
GO:0090694 all species →	Cellular Component	Scc2-Scc4 cohesin loading complex	Interproscan
GO:1990414 all species →	Biological Process	replication-born double-strand break repair via sister chromatid exchange	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_16725.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.