Gene detail

Detailed information of evm.model.contig_16950.12 in Platygyra sinensis

Genomic Location: contig_16950:63342...96124
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_16950.12

ATGTTTGGACTATTAACAACGATTTCAGAGTATGTTTGGAGAACGGAAGGGGAAAATGATAGTGCCAAAACCCATCTGCAGAAGACAGTTGACAAGGAGAAAAACTTGAAATCAAGCAAACCGCGGCTAAAGAAAGATCTTTTTGGCAAAGTGTCCAGGCTGTACGATGGCTCAGGAGTAATTGAAGGGGAAGTTTACTTCACATTTGACTGTGTTATGGGCGGCATTCGCCCTGAAGTTGGCACCGAAGTGCACGTAGAGGCCTCCCGCGACTCCGAGACGGCTGGTTGGATGGCAACGCGGGTTCAGGTCATGAAAGAATGGAAACCTGACGATACTAAAAACCCTGCTTCATCTGCAGAGACATTTATTGGCATAATCACAAACATCGATCAAGATTCAGGGGTTGTGGATGATGATGTCACTTTCAAATTGTCCTGTGTACGTTTTGGCTATACGCCTTATCAGGGAGACTGGGTCAAGTTGGATCTTGAGATGTCACCTGATGGAACATCTGAGGTCAGGGGGGTCATGCCACTCCGAGAGAAGAATTTTACAGGGACAGTGACCTATGTGTCATCAGGGTTTGGTTATATTGACAAAGATGTGTTTTTTACCTGTGGGGTGTGCCCCCGGGGATATAGACCTTGCCAAGGGAATGTTGTGAAGGTGACAGCAATTGAGTCACAGCAAGATAAAGCATTATGGAGGGCTATTAAAGTGGAGCTGAAAAGAACAAGTCTCGTAATGTTAAGCCCATCACCACACAGCCAAATGTTCATGGGAGGCAGAATGGCAGAGCTTTTAAGAAACAAAGAAGGATTAACTATCACAGATCAGCTTGATTTTGGAAGTGTCATGGTGGGAGAATCCAAAGCGTTGACTGTATGGATAAGCAACAAGGGTGAAAAAGGACAAATCTTTCAGTCTTGTACATCAGTCAGAGATGATCCTCAGTTCTCTGTCCAGCTGGCCAACAAACCACTCTGCCAATCAGATGTGCAGGGTAGCCATTATAAGAACAGATCTTTTTCTGTTGAGGAACTGTTACTCCAGGGATCCTTATTAGCACCGGGAATGGAAATACCTCCAAACCAGGCCAAGCAAGTGGTTGTTATATTCAATGCAAAAAACCTTGGGCGAGTCAATCATCTGTTAGTATTCAATTTTGAAGGGTTTGAAATTGGACGATACATTACTTCCAATGTGGAGGACCCTCGACAAGCTGTTCTGAGTCCATCAGCGCCATACCAGCGGTCACACAACAGAACCAAAGAAGCTTGGAAAAAGGTTGCTGATAGCAACAGTGGGGAACAATGGATTGTGCCAGGAGAAAAGCCATTAAGAAAACGCAAGATGTTTCTGCCCGTAAAGCTTTCACAGTACAATATTCCAAGAGACATAAGGAGATGTCTTCTAGATGGTGGAGATTTGGGCTCCATTGTTCATGCACTAAGAGAGCCATTGTCCTTGAAGACATATATAGCACGGTTTTCAACTCTTCTTTATGCCGAAGAACTACAAATGGAGGTAGACATGAGAGAATTTGACATGGAAAGGGTGAACATGAATGTGTGTCGTGAATTTCTCAGTCTCACTGTACCAGGATTAGCAGAAGGAAGACCCTCACTGTTGCTTGGCGACAAGATTGTTGCCTCTCTTACAGGTAGTTTATCTGACTCTCCTAAATATGAGGGTTACATTCATGAGGTGCGCAAGGATGACATTTTGCTGAAGTTTAATGAAGAATTCCACAACAGATTTGCTATGCAGGAATGCGATGTAATGTTCTATTTTAACAGGACGACACTTAGAAGAGCTCACCGTGCGGTCGAATTTGCTTTAACTCTTGGAGAAGAAGTATTGTTTCCGAGGAGATTGTCTCCCAAGTTACCAGTCTTGACTTTGGCCCTCACTAATTCATCGACAAGTAAACAGAAGACAGACACTGAACCAGGTGCACCCTTAAACGATAGTAAAGCTGAGTCTTCTACCAAACATAGATCTGAGGATTTCTTGTACAACACGTCCCTGAATGAACGTCAGAGAGCGGCGGTTTGCCGTATAGTTAGTGGTCAATGTCGCCCAACTCCATATCTGTTATTTGGTCCTCCTGGAACTGGCAAGACAATCACTGTGGTGGAGGCTATTCTACAGATCTTTCACAGAATTCCTTCCAGCCGAATTTTGGCCTGTGCTCCGTCAAACAGCGCCGCTGATTTAATTGCAGAGCGACTTCACCTGAGCGGTTTTATTCAAGAAGGAGACATGGTCCGACTAAATGCTATTCAGCGAGCGCAGAGTATCCCAGAATCCATCACTCCATACTGCACGGACACAGATCAGTTGGACATGGCGGCGCGTTATCGCGTCATAATCAGCACATGCAGTACAGCTGGTCAGCTGTATTCCCTTGGATTGCGGGCAGATCACATCTCGCATGTATTTGTTGATGAGGCGGGGCAAGCTACTGAGACCGAGTGCCTTGTCGCTGTTGGACTGGCCGCAGGGGATGATGGGCAGGTGGTCCTCGCAGGCGATCCTTTCCAGCTCGGCCCAGTCCTTCAATCTCGTGTAGCGTCCTCATATGGACTGGAAATCTCTCTGCTGGAGCGGTTAATGAGCAGACCTCTTTACTGTAGGAATGAAGTCAAATTCTCTGACCATGGTTGCTACGATCCACTTCTAGTTACCAAACTGATTAATAATTATCGTTCACACCCAGCCGTGCTCAAACTCCCCTCTGCTGTTTTTTATCATAATGAGCTCAAGCCCTGTGCCGAGGTGCGGATGCGGGAAAGTTTGTGTGAGTGGGAAAAGCTGCCAAACAAAGGATTTCCTGTTATTTTTCACGGTCTTAAGGGTGAAGATATTCGTGAAGGTAATAGTCCATCGTGGTTCAACCCAGTGGAAGCTGTTCAAGTTGTGAAGTATTTACAGTCTCTCAGATCAAGCGACAAGGTCTTCCTCAAACTCTCTGATGTCGGTGTTATTACTCCTTACAGGAAGCAGGTGGAAAAGCTCCGTCTTCTGTTAGATCGCCTGGGACTGGAAGAAGTCAAGGTTGGGTCTGTGGAGGAATTTCAGGGCCAGGAAAGACTTGCTATTATCATATCAACATTAAAGCACAATTACAAGGACGATACAAACAATATTACGTAA

Transcript

evm.model.contig_16950.12

ATGTTTGGACTATTAACAACGATTTCAGAGTATGTTTGGAGAACGGAAGGGGAAAATGATAGTGCCAAAACCCATCTGCAGAAGACAGTTGACAAGGAGAAAAACTTGAAATCAAGCAAACCGCGGCTAAAGAAAGATCTTTTTGGCAAAGTGTCCAGGCTGTACGATGGCTCAGGAGTAATTGAAGGGGAAGTTTACTTCACATTTGACTGTGTTATGGGCGGCATTCGCCCTGAAGTTGGCACCGAAGTGCACGTAGAGGCCTCCCGCGACTCCGAGACGGCTGGTTGGATGGCAACGCGGGTTCAGGTCATGAAAGAATGGAAACCTGACGATACTAAAAACCCTGCTTCATCTGCAGAGACATTTATTGGCATAATCACAAACATCGATCAAGATTCAGGGGTTGTGGATGATGATGTCACTTTCAAATTGTCCTGTGTACGTTTTGGCTATACGCCTTATCAGGGAGACTGGGTCAAGTTGGATCTTGAGATGTCACCTGATGGAACATCTGAGGTCAGGGGGGTCATGCCACTCCGAGAGAAGAATTTTACAGGGACAGTGACCTATGTGTCATCAGGGTTTGGTTATATTGACAAAGATGTGTTTTTTACCTGTGGGGTGTGCCCCCGGGGATATAGACCTTGCCAAGGGAATGTTGTGAAGGTGACAGCAATTGAGTCACAGCAAGATAAAGCATTATGGAGGGCTATTAAAGTGGAGCTGAAAAGAACAAGTCTCGTAATGTTAAGCCCATCACCACACAGCCAAATGTTCATGGGAGGCAGAATGGCAGAGCTTTTAAGAAACAAAGAAGGATTAACTATCACAGATCAGCTTGATTTTGGAAGTGTCATGGTGGGAGAATCCAAAGCGTTGACTGTATGGATAAGcAACAAGGGTGAAAAAGGACAAATCTTTCAGTCTTGTACATCAGTCAGAGATGATCCTCAGTTCTCTGTCCAGCTGGCCAACAAACCACTCTGCCAATCAGATGTGCAGGGTAGCCATTATAAGAACAGATCTTTTTCTGTTGAGGAACTGTTACTCCAGGGATCCTTATTAGCACCGGGAATGGAAATACCTCCAAACCAGGCCAAGCAAGTGGTTGTTATATTCAATGCAAAaaacCTTGGGCGAGTCAATCATCTGTTAGTATTCAATTTTGAAGGGTTTGAAATTGGACGATACATTACTTCCAATGTGGAGGACCCTCGACAAGCTGTTCTGAGTCCATCAGCGCCATACCAGCGGTCACACAACAGAACCAAAGAAGCTTGGAAAAAGGTTGCTGATAGCAACAGTGGGGAACAATGGATTGTGCCAGGAGAAAAGCCattaagAAAACGCAAGATGTTTCTGCCCGTAAAGCTTTCACAGTACAATATTCCAAGAGACATAAGGAGATGTCTTCTAGATGGTGGAGATTTGGGCTCCATTGTTCATGCACTAAGAGAGCCATTGTCCTTGAAGACATATATAGCACGGTTTTCAACTCTTCTTTATGCCGAAGAACTACAAATGGAGGTAGACATGAGAGAATTTGACATGGAAAGGGTGAACATGAATGTGTGTCGTGAATTTCTCAGTCTCACTGTACCAGGATTAGCAGAAGGAAGACCCTCACTGTTGCTTGGCGACAAGATTGTTGCCTCTCTTACAGGTAGTTTATCTGACTCTCCTAAATATGAGGGTTACATTCATGAGGTGCGCAAGGATGACATTTTGCTGAAGTTTAATGAAGAATTCCACAACAGATTTGCTATGCAGGAATGCGATGTAATGTTCTATTTTAACAGGACGACACTTAGAAGAGCTCACCGTGCGGTCGAATTTGCTTTAACTCTTGGAGAAGAAGTATTGTTTCCGAGGAGATTGTCTCCCAAGTTACCAGTCTTGACTTTGGCCCTCACTAATTCATCGACAAGTAAACAGAAGACAGACACTGAACCAGgTGCACCCTTAAACGATAGTAAAGCTGAGTCTTCTACCAAACATAGATCTGAGGATTTCTTGTACAACACGTCCCTGAATGAACGTCAGAGAGCGGCGGTTTGCCGTATAGTTAGTGGTCAATGTCGCCCAACTCCATATCTGTTATTTGGTCCTCCTGGAACTGGCAAGACAATCACTGTGGTGGAGGCTATTCTACAGATCTTTCACAGAATTCCTTCCAGCCGAATTTTGGCCTGTGCTCCGTCAAACAGCGCCGCTGATTTAATTgcAGAGCGACTTCACCTGAGCGGTTTTATTCAAGAAGGAGACATGGTCCGACTAAATGCTATTCAGCGAGCGCAGAGTATCCCAGAATCCATCACTCCATACTGCACGGACACAGATCAGTTGGACATGGCGGCGCGTTATCGCGTCATAATCAGCACATGCAGTACAGCTGGTCAGCTGTATTCCCTTGGATTGCGGGCAGATCACATCTCGCATGTATTTGTTGATGAGGCGGGGCAAGCTACTGAGACCGAGTGCCTTGTCGCTGTTGGACTGGCCGCAGGGGATGATGGGCAGGTGGTCCTCGCAGGCGATCCTTTCCAGCTCGGCCCAGTCCTTCAATCTCGTGTAGCGTCCTCATATGGACTGGAAATCTCTCTGCTGGAGCGGTTAATGAGCAGACCTCTTTACTGTAGGAATGAAGTCAAATTCTCTGACCATGGTTGCTACGATCCACTTCTAGTTACCAAACTGATTAATAATTATCGTTCACACCCAGCCGTGCTCAAACTCCCCTCTGCTGTTTTTTATCATAATGAGCTCAAGCCCTGTGCCGAGGTGCGGATGCGGGAAAGTTTGTGTGAGTGGGAAAAGCTGCCAAACAAAGGATTTCCTGTTATTTTTCACGGTCTTAAGGGTGAAGATATTCGTGAAGGTAATAGTCCATCGTGGTTCAACCCAGTGGAAGCTGTTCAAGTTGTGAAGTATTTACAGTCTCTCAGATCAAGCGACAAGGTCTTCCTCAAACTCTCTGATGTCGGTGTTATTACTCCTTACAGGAAGCAGGTGGAAAAGCTCCGTCTTCTGTTAGATCGCCTGGGACTGGAAGAAGTCAAGGTTGGGTCTGTGGAGGAATTTCAGGGCCAGGAAAGACTTGCTATTATCATATCAACATTAAAGCACAATTACAAGGACGATACAAACAATATTACGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF21635 all species →	Mov-10_helical	Helicase MOV-10, helical domain	Domain	Interproscan
PF14444 all species →	S1-like	S1-like	Domain	Interproscan
PF21634 all species →	MOV-10_beta-barrel	Helicase MOV-10, beta-barrel domain	Domain	Interproscan
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR049079 all species →	Domain	Helicase MOV-10, helical domain	Interproscan
IPR045055 all species →	Family	DNA2/NAM7-like helicase	Interproscan
IPR025223 all species →	Domain	S1-like RNA binding domain	Interproscan
IPR049080 all species →	Domain	Helicase MOV-10-like, beta-barrel domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887 all species →	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0035194 all species →	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_16950.12.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.