Gene detail

Detailed information of evm.model.contig_17689.1 in Platygyra sinensis

Genomic Location: contig_17689:8612...15289
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14492 all species →	EFG_III	Elongation Factor G, domain III	Domain	Interproscan
PF00291 all species →	PALP	Pyridoxal-phosphate dependent enzyme	Family	Interproscan
PF12012 all species →	DUF3504	Domain of unknown function (DUF3504)	Family	Interproscan
PF03764 all species →	EFG_IV	Elongation factor G, domain IV	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041095 all species →	Domain	Elongation Factor G, domain II	Interproscan
IPR027278 all species →	Family	1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR001926 all species →	Domain	Tryptophan synthase beta chain-like, PALP domain	Interproscan
IPR021893 all species →	Domain	Domain of unknown function DUF3504	Interproscan
IPR035647 all species →	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR036052 all species →	Homologous_superfamily	Tryptophan synthase beta chain-like, PALP domain superfamily	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR005517 all species →	Domain	Translation elongation factor EFG/EF2, domain IV	Interproscan
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43780 all species →	1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019148 all species →	Molecular Function	D-cysteine desulfhydrase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_17689.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.