Gene detail

Detailed information of evm.model.contig_17944.1 in Platygyra sinensis

Genomic Location: contig_17944:647...15425
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_17944.1

ATGCGATTGTACATTACTTTTTCAAAAAATTTTGAAAAGTTGGACAACAAAGAAATAGGTCCATATCCCAACAGTACTATTACATTAGAATTTAAAGAATTTATCACAGAATGTTCTTATGACTATCTGTTCATCCATGATGGTGACTCGTACCTTTCTCCTCTCATTGGAGCCATCAGTGGAAAGAATTTGGTACAAACAGTTGTAGCACACTCAGGCCAGATGTTGATAAATCTTTACAGTGACTTCAACTACTCCCTTGAAGGTTTTGTTGCTAACTACACAATAGAGAATTGTACCCAGGGATGTTCTGGTCGTGGTACTTGTAAGAATGGCTTCTGCCAGTGCGATAACTTATGGCATGGCAAGGCATGTGACTTACATGTATGTCCATCACTCTGTTTGGAAGGACAAGGACAGGGACGTTGCAATTTGTCCCACAGCCATTGTGTGTGTAACCCTGGCTTCATAGGAGAGTCTTGTTCTCTTTCCACACTGACCGATTTCAATTCAAATAACTGGTTCACAATTTCTTCAACCTCATCTGTTTTTAGCCCCAGAGCAGCACATTCTGTTGTTTATGTTGAGAAAAGTGATACATTACTTGCATTTGGAGGTTATTCTTTAAATAAAGTTTTGGATGACTTGCTGCAGTTTGATTTTACTATTAGTCTGTGGAGAGAGGTTCATGCTGGATCTCCTAAACCTGCTGGGCGCTTTTCTCACACTGCAAACCTATATCTTGATGCCATGGTGGTGTTTGGCGGAGAATTACAGGATGGCAACCTTACCAATGATCTTTGGCTCTATAACTTAACTCTTAACAAATGGACAGAGCTTGGTATGAATAATACTGTTAAACCACCTCCTCGCGCTGAACACAGCGCCACTGTGGTGAATGATGTACTATACATTTTTGGTGGTCGTACCAGTAGTGAGCCATTTTCTTCAGACATGTACTCATATTCATTATCAAGTCAAACTGGTTGGACAAAGATTTTATATCATGGTGGGAATGAACTGCATTTGCGTATGTTGGGACATACAGCAGTTTATTATGCTGATCTGCATTCTCTTCTTGTCTTTGGCGGATTTGTTCCTCACAGAGCAAGGAGCGGTGGCACCTCTAACAGACTTCTTGCTTTTCATCTTGATCATCAAGTGTGGGCTGAGCTTGCTGTGTCAGGAGATGTTCCCAGAGGTCGTTCATTTCACTCTGCAGTTTTGGTTGGTGACTACTTGGTTATTTACGGTGGAAATGTTCATATACATCGAAAAGAAGAAATATGTCATGACAACAGCCTTTTGTTCTACCATCTGAAATGCCACAAGTGGATTTCACCACCAACATTTGATGCTCTTTCTCCTTCCTCCGGCAATCCACAGCAAGGAAGGTTCTCTCACAGAGCTGTACTGCGGAATGGATCAGTCATGCTTGTTGTGGGAGGGTTTAGTGGGCTGCCATTGGGTGATGTCTTAGGTTTTAAATTGCCTACTGCCATTGCAGAAAAGAGTTCTTCAAGTGGGCACTGTGAGGGTTACAGTATTGAGAAGAACTGTAAAGAAGACCCAGAATGTGGGTGGTGTAACACAGTATCCAAGTGTCTCAGCTTAGATCAATCAGGAAGTTGCAGTGCAACTCTCTCAATGGGTTCCTGTCCTGGACCATGTGCTGTACATGCACAATGCAGGGCTTGTTTATTAGTCGGCAATGCACAATGCGGTTGGTGTGTTGAGGACAGCAGATGTTATCCAAAAGATTCACCAGCAGGTGCCTGTCATGTGGTGTCAAGCCAAGGCTGGTGGGGCGATACAGGAAATTTTCTTACATCAGCAAACGAGTGTCAAACCATGGATTTTCCACCAGGGATCACTGTTATTGAGAATGTTCAATATCCAAACAGTTCTTTTCCTGACGGAGTCAGGATTATCTCAACATCAGAAGTCACAATTTTTCGTGCTGGGGTATCATCTGTAGACAGAGTACGTGTGACTCAGCTGAAGGGATTTGTATATCCCTTTAAGAACCAGTCAGCGCCATGGAAGTCTTATGAATTGTATCTTAAGGTTAGCAATTCCAGACACAGTGATGCAACGTTATGGCTCAGCACTGATGATACAGAGGCTAACAGTGAGTTGGTGGCTCATTGTCCTCTTGAACAGTCATGCTCAGATAGAGCTATGCGTAGCAATAATCAGCCCCTCTTCCCATCCCCATCAGAAGACAAGAGATATTATATCAGAGCAGAAGTTCGCAAGGAGATAGGATCTGTGGACTCTACAGATTCTGTCTTAAGTATCGAGTGGAATCGAAGTAGTACACCTTTCCAATCGAAGCCCATAAGTGTACAGTTCCTCCAACCTTTTGCCAGTTCGGATTGTTCTGTGTACACAACCTGCCTCGCTTGCATGACTGATGCCTCTTGTGGCTGGTGCATGACATCCTGTATGTCACGACATGCTTCACCTGAGTCCTGTCAGGACAGTCACGGAAATGCAAGAAATCTGACGATAAATGCAACTATGTGCACATTATGTTCAGACCATGTGGATTGTCACTCTTGTGTTCAGGGTGGTGACTGTGTGTGGGGTATAATCAATCCTTCTCTTGGCTGTTATCGTAAAGGACGGCTATTAGACAGCGTAATTCAGAATTGCAGTAGCCCTTGTTCAAGTGCGACTACTCAAACTGGGCAACTTGGAAGACAACAACAACACTTCATTCACTCTAAACACTTTAAACACAGTTACATTGAAAGTGACTAA

Transcript

evm.model.contig_17944.1

ATGCGATTGTACAttactttttcaaaaaattttgaaaagttggacaacaaagaaatagGTCCATATCCCAACAGTACTATTACATTAGAATTTAAAGAATTTATCACAGAATGTTCTTATGACTATCTGTTCATCCATGATGGTGACTCGTACCTTTCTCCTCTCATTGGAGCCATCAGTGGAAAGAATTTGGTACAAACAGTTGTAGCACACTCAGGCCAGATGTTGATAAATCTTTACAGTGACTTCAACTACTCCCTTGAAGGTTTTGTTGCTAACTACACAATAGAGAATTGTACCCAGGGATGTTCTGGTCGTGGTACTTGTAAGAATGGCTTCTGCCAGTGCGATAACTTATGGCATGGCAAGGCATGTGACTTACATGTATGTCCATCACTCTGTTTGGAAGGACAAGGACAGGGACGTTGCAATTTGTCCCACAGCCATTGTGTGTGTAACCCTGGCTTCATAGGAGAGTCTTGTTCTCTTTCCACACTGACCGATTTCAATTCAAATAACTGGTTCACAATTTCTTCAACCTCATCTGTTTTTAGCCCCAGAGCAGCACATTCTGTTGTTTATGTTGAGAAAAGTGATACATTACTTGCATTTGGagGTTattctttaaataaagttttggatGACTTGCTGCAGTTTGATTTTACTATTAGTCTGTGGAGAGAGGTTCATGCTGGATCTCCTAAACCTgCTGGGCGCTTTTCTCACACTGCAAACCTATATCTTGATGCCATGGTGGTGTTTGGCGGAGAATTACAGGATGGCAACCTTACCAATGATCTTTGGCTCTATAACTTAACTCTTAACAAATGGACAGAGCTTGGTATGAATAATACTGTTAAACCACCTCCTCGCGCTGAACACAGCGCCACTGTGGTGAATGATGTACTATACATTTTTGGTGGTCGTACCAGTAGTGAGCCATTTTCTTCAGACATGTACTCATattcattatcaagtcaaacTGGTTGGACAAAGATTTTATATCATGGTGGGAATGAACTGCATTTGCGTATGTTGGGACATACAGCAGTTTATTATGCTGATCTGCATTCTCTTCTTGTCTTTGGCGGATTTGTTCCTCACAGAGCAAGGAGCGGTGGCACCTCTAACAGACTTCTTGCTTTTCATCTTGATCATCAAGTGTGGGCTGAGCTTGCTGTGTCAGGAGATGTTCCCAGAGGTCGTTCATTTCACTCTGCAGTTTTGGTTGGTGACTACTTGGTTATTTACgGTGGAAATGTTCATAtacatcgaaaagaagaaatATGTCATGACAACAGCCTTTTGTTCTACCATCTGAAATGCCACAAGTGGATTTCACCACCAACATTTGATGCTCTTTCTCCTTCCTCCGGCAATCCACAGCAAGGAAGGTTCTCTCACAGAGCTGTACTGCGGAATGGATCAGTCATGCTTGTTGTGGGAGGGTTTAGTGGGCTGCCATTGGGTGATGTCTTAGGTTTTAAATTGCCTACTGCCATTGCAGAAAAGAGTTCTTCAAGTGGGCACTGTGAGGGTTACAGTATTGAGAAGAACTGTAAAGAAGACCCAGAATGTGGGTGGTGTAACACAGTATCCAAGTGTCTCAGCTTAGATCAATCAGGAAGTTGCAGTGCAACTCTCTCAATGGGTTCCTGTCCTGGACCATGTGCTGTACATGCACAATGCAGGGCTTGTTTATTAGTCGGCAATGCACAATGCGGTTGGTGTGTTGAGGACAGCAGATGTTATCCAAAAGATTCACCAGCAGGTGCCTGTCATGTGGTGTCAAGCCAAGGCTGGTGGGGCGATACAGGAAATTTTCTTACATCAGCAAACGAGTGTCAAACCATGGATTTTCCACCAGGGATCACTGTTATTGAGAATGTTCAATATCCAAACAGTTCTTTTCCTGACGGAGTCAGGATTATCTCAACATCAGAAGTCACAATTTTTCGTGCTGGGGTATCATCTGTAGACAGAGTACGTGTGACTCAGCTGAAGGGATTTGTATATCCCTTTAAGAACCAGTCAGCGCCATGGAAGTCTTATGAATTGTATCTTAAGGTTAGCAATTCCAGACACAGTGATGCAACGTTATGGCTCAGCACTGATGATACAGAGGCTAACAGTGAGTTGGTGGCTCATTGTCCTCTTGAACAGTCATGCTCAGATAGAGCTATGCGTAGCAATAATCAGCCCCTCTTCCCATCCCCATCAGAAGACAAGAGATATTATATCAGAGCAGAAGTTCGCAAGGAGATAGGATCTGTGGACTCTACAGATTCTGTCTTAAGTATCGAGTGGAATCGAAGTAGTACACCTTTCCAATCGAAGCCCATAAGTGTACAGTTCCTCCAACCTTTTGCCAGTTCGGATTGTTCTGTGTACACAACCTGCCTCGCTTGCATGACTGATGCCTCTTGTGGCTGGTGCATGACATCCTGTATGTCACGACATGCTTCACCTGAGTCCTGTCAGGACAGTCACGGAAATGCAAGAAATCTGACGATAAATGCAACTATGTGCACATTATGTTCAGACCATGTGGATTGTCACTCTTGTGTTCAGGGTGGTGACTGTGTGTGGGGTATAATCAATCCTTCTCTTGGCTGTTATCGTAAAGGACGGCTATTAGACAGCGTAATTCAGAATTGCAGTAGCCCTTGTTCAAGTGCGACTACTCAAACTGGGCAACTTggaagacaacaacaacacttCATTCACTCTAAACACTTTAAACACAGTTACATTGAAAGTGACTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00431 all species →	CUB	CUB domain	Domain	Interproscan
PF13418 all species →	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR016201 all species →	Domain	PSI domain	Interproscan
IPR052637 all species →	Family	Cullin-RING ligase complex substrate-recognition protein	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46461 all species →	KELCH DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_17944.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.