Gene detail

Detailed information of evm.model.contig_18875.7 in Platygyra sinensis

Genomic Location: contig_18875:83095...91972
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_18875.7

ATGCTCATGGAAAAAATAGGTACGACAGTTGAAGCTGAGTATGTGCTGTCTTTGGGCGCAATGAGTGAGGAAAAGTTCAAAGAGGCCATTACTGATCAGTACAGTGATTTATATTGGGACGAGGACCTTCTTCATGATATGTACGAGGCTGTCACAGGCGGAGAACAGAGTAGAAGCCCAACTTTACAATTCTCTGAGAGCACTGTCAGTGACATCAGCCCTCCGGAGTCTATTAATTTGTCACATGAGGAATCCTATCTCAGTCTGGAGCCGTTGTATTTTAACTCCATCTCCAGAAGCAGCAGTGAGAGGAGTGGGACTGGGGCGAAGGACATTCTCATGTCTCCGCTAGGAGAAGCTACTGAGTTTTTGCCCATCAAAGTCATTGCTCCCGAAATGCAAGCTGACATCCAGGAATTGTTAACACCTATTTTTGAGGACTATCACAGAGTAATGGAAGTCAAACTGGCAACGAGCGTGGAGGATTTGATGGAAAAACTGGGAACTAAAATTATGGAAATCTCTCAGCAACTGATGCTGGAGCGAAGAGCTAAGAAAAAGAATATGAATTCCTACAACAAGATGGCGGATGCGGAGAATAAGAAAGATGTGAAAGACCTGGCGTCTAAACTGGTCAACGAAATCGAGGAATGTGATAAGAAAATTATTTACTTGAAAAATGTTCAACGACAGTTTAGGAATGTGTACGCCGAGCGCTTTGGAATAGACACATCCCTACTGTATTCATTTCTTGTGAGCTATAACAAGAGCTCTGTGGCATTAATACCGGAATTAAATAATACCTTCTTAACCTTTTCCCCGATATGGAACCAGAGGCTGAATGAAAGTACAGATATCGTGGATGAGTCACTAACTGGCCCTTCCCTTCAATCAGGCACCAAACTTGGCTTGTTCTCTTATCTCTTTGACAGACATGCCATGAGTCAGGCATATGTTCGTTACTTTCTTTACACCTTCCGTTACGTTACTACTGCTCAGGAATTGTTTACTTTCATCAGAGAAAAATGCTCAGCTTCTCTTAGAACGGACACCTCAGGCCAGGTATACAACCATCAGCTTCAGATCAGATACCGTGCTCTGGACCTGTTATCTGAGTGGATTGACGGTTACTATCACTTTGACTTTAAAACAAATCCCAATCTTATCAAAGAACTACTTGCATTTGTTAAAGATGAATTGATTCTCGTGGATAGAAGCGAAAGAGGTCATTACCTGATGGAACTTATTGCAGAGAAACAGAAAAGAGATTTAAACAATAACTCAGTGTCAGATGAACCCAGTGATTTCGTTGCTGTACTTCAGCTAGAGGACCCCCAAGGTCTTAACTCGGTAGACGACAAAAAAGAGTCACCAAGAAAGCCAATGGGCAGCCGCAAGTCCAAGTCACCAGTGCAGTGCTTCCGAAGAGCCACACCCGAGAAGAGCATGACATACAAACCAACCCTGTACCTCAAGGCTCTCTCAGTTCTGGACCACTCATCACGAATCCTGGCCGAGCAACTTACACTTATACAACAGGACTTATTCTTTCACATCCACCCGGTACATTTCCTAAACTCTCGTGCGCATGGCATTGGTGTTGGTCGGACCCAGTCTCCTACCAGAGAACGCGACAGCATCTTTGGCTTCAGTACCGGAAGTCGACGCGTCAAAGAACAACCCGCCAGTTCCGGTGAGGTACCCATCCCTTGGGAGCAAAATATGTACGTCAGCGAGCCCAGCACAGATGGCCATCTGGAACAACTCTTGGAACATGCGCAAGACGTGTCCCTGTGGGTGGCTGTTGAGATCTGTAGTGCCTCTTCAATAAAGGCTCAACTTGCCCTCATTACCAAGTTTCTGAATGCTGCGCGCTACTGCTGTGAGATTCGTAACTACAGCACGTGTATCCAGATCGTTGACGCCCTGGAAATGTTTGTCATCAGACAGTTACCGGTTTGGAGACAAGTTCACACAAAAACGACAGAGGCACTTGAAGAACTTAAAGCCGTTAAGGTTTTGCTGAAGACAGACAGCTCGTGGTTGATGAAGAGTGAAGCGTCACGCGACAAACCCACAATTCCGTGCTTCCTTTTGTTCGTTATTCACGTTCAACAACAGGAGCTTGGAGGGTTCACGTTACCGAACGACATGTTCAAGTGGACAAAGATGAGATCAGCTGCTCGACTAGTGGACCAGATACGCTTGTTTAAACAGATGCGTTATGCCTTCCAGACAGATGACGAATTGAAAGACAGACTAAAACAGCGTATACAAGAGTGCAAAAAGGAAAACCTTCATGCTTTAGCTTCTGAGAATGCGAGCAACTTTCATTTATCGTCTTCACATGGATCTAAGAAATTCCACGATGCATTTAAGAAGATGAAAGCGACTTTCGGAAGCCATAATTAG

Transcript

evm.model.contig_18875.7

ATGCTCATGGAAAAAATAGGTACGACAGTTGAAGCTGAGTATGTGCTGTCTTTGGGCGCAATGAGTGAGGAAAAGTTCAAAGAGGCCATTACTGATCAGTACAGTGATTTATATTGGGACGAGGACCTTCTTCATGATATGTACGAGGCTGTCACAGGCGGAGAACAGAGTAGAAGCCCAACTTTACAATTCTCTGAGAGCACTGTCAGTGACATCAGCCCTCCGGAGTCTATTAATTTGTCACATGAGGAATCCTATCTCAGTCTGGAGCCGTTGTATTTTAACTCCATCTCCAGAAGCAGCAGTGAGAGGAGTGGGACTGGGGCGAAGGACATTCTCATGTCTCCGCTAGGAGAAGCTACTGAGTTTTTGCCCATCAAAGTCATTGCTCCCGAAATGCAAGCTGACATCCAGGAATTGTTAACACCTATTTTTGAGGACTATCACAGAGTAATGGAAGTCAAACTGGCAACGAGCGTGGAGGATTTGATGGAAAAACTGGGAACTAAAATTATGGAAATCTCTCAGCAACTGATGCTGGAGCGAAGAGCTAAGAAAAAGAATATGAATTCCTacaacaagatggcggatgcgGAGAATAAGAAAGATGTGAAAGACCTGGCGTCTAAACTGGTCAACGAAATCGAGGAATGTGATAAGAAAATTATTTACTTGAAAAATGTTCAACGACAGTTTAGGAATGTGTACGCCGAGCGCTTTGGAATAGACACATCCCTACTGTATTCATTTCTTGTGAGCTATAACAAGAGCTCTGTGGCATTAATACCGGAATTAAATAATACCTTCTTAACCTTTTCCCCGATATGGAACCAGAGGCTGAATGAAAGTACAGATATCGTGGATGAGTCACTAACTGGCCCTTCCCTTCAATCAGGCACCAAACTTGGCTTGTTCTCTTATCTCTTTGACAGacaTGCCATGAGTCAGGCATATGTTCGTTACTTTCTTTACACCTTCCGTTACGTTACTACTGCTCAGGAATTGTTTACTTTCATCAGAGAAAAATGCTCAGCTTCTCTTAGAACGGACACCTCAGGCCAGGTATACAACCATCAGCTTCAGATCAGATACCGTGCTCTGGACCTGTTATCTGAGTGGATTGACGGTTACTATCACTTTGACTTTAAAACAAATCCCAATCTTATCAAAGAACTACTTGCATTTGTTAAAGATGAATTGATTCTCGTGGATAGAAGCGAAAGAGGTCATTACCTGATGGAACTTATTGCAGAGAAACAGAAAAGAGATTTAAACAATAACTCAGTGTCAGATGAACCCAGTGAtttcgttgctgtacttcagctAGAGGACCCCCAAGGTCTTAACTCGGTAGACGACAAAAAAGAGTCACCAAGAAAGCCAATGGGCAGCCGCAAGTCCAAGTCACCAGTGCAGTGCTTCCGAAGAGCCACACCCGAGAAGAGCATGACATACAAACCAACCCTGTACCTCAAGGCTCTCTCAGTTCTGGACCACTCATCACGAATCCTGGCCGAGCAACTTACACTTATACAACAGGACTTATTCTTTCACATCCACCCGGTACATTTCCTAAACTCTCGTGCGCATGGCATTGGTGTTGGTCGGACCCAGTCTCCTACCAGAGAACGCGACAGCATCTTTGGCTTCAGTACCGGAAGTCGACGCGTCAAAGAACAACCCGCCAGTTCCGGTGAGGTACCCATCCCTTGGGAGCAAAATATGTACGTCAGCGAGCCCAGCACAGATGGCCATCTGGAACAACTCTTGGAACATGCGCAAGACGTGTCCCTGTGGGTGGCTGTTGAGATCTGTAGTGCCTCTTCAATAAAGGCTCAACTTGCCCTCATTACCAAGTTTCTGAATGCTGCGCGCTACTGCTGTGAGATTCGTAACTACAGCACGTGTATCCAGATCGTTGACGCCCTGGAAATGTTTGTCATCAGACAGTTACCGGTTTGGAGACAAGTTCACACAAAAACGACAGAGGCACTTGAAGAACTTAAAGCCGTTAAGGTTTTGCTGAAGACAGACAGCTCGTGGTTGATGAAGAGTGAAGCGTCACGCGACAAACCCACAATTCCGTGCTTCCTTTTGTTCGTTATTCACGTTCAACAACAGGAGCTTGGAGGGTTCACGTTACCGAACGACATGTTCAAGTGGACAAAGATGAGATCAGCTGCTCGACTAGTGGACCAGATACGCTTGTTTAAACAGATGCGTTATGCCTTCCAGACAGATGACGAATTGAAAGACAGACTAAAACAGCGTATACAAGAGTGCAAAAAGGAAAACCTTCATGCTTTAGCTTCTGAGAATGCGAGCAACTTTCATTTATCGTCTTCACATGGATCTAAGAAATTCCACGATGCATTTAAGAAGATGAAAGCGACTTTCGGAAGCCATAATTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00617 all species →	RasGEF	RasGEF domain	Family	Interproscan
PF00618 all species →	RasGEF_N	RasGEF N-terminal motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000651 all species →	Domain	Ras-like guanine nucleotide exchange factor, N-terminal	Interproscan
IPR023578 all species →	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR029899 all species →	Family	Kinase non-catalytic C-lobe domain-containing protein 1	Interproscan
IPR001895 all species →	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR036964 all species →	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21560 all species →	VERY KIND PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0032045 all species →	Cellular Component	guanyl-nucleotide exchange factor complex	Interproscan
GO:0043025 all species →	Cellular Component	neuronal cell body	Interproscan
GO:0048814 all species →	Biological Process	regulation of dendrite morphogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_18875.7.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.