Gene detail

Detailed information of evm.model.contig_19125.6 in Platygyra sinensis

Genomic Location: contig_19125:32983...38066
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02747 all species →	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain	Domain	Interproscan
PF00705 all species →	PCNA_N	Proliferating cell nuclear antigen, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022659 all species →	Conserved_site	Proliferating cell nuclear antigen, PCNA, conserved site	Interproscan
IPR046938 all species →	Homologous_superfamily	DNA clamp superfamily	Interproscan
IPR000730 all species →	Family	Proliferating cell nuclear antigen, PCNA	Interproscan
IPR022649 all species →	Domain	Proliferating cell nuclear antigen, PCNA, C-terminal	Interproscan
IPR022648 all species →	Domain	Proliferating cell nuclear antigen, PCNA, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11352 all species →	PROLIFERATING CELL NUCLEAR ANTIGEN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006275 all species →	Biological Process	regulation of DNA replication	Interproscan
GO:0030337 all species →	Molecular Function	DNA polymerase processivity factor activity	Interproscan
GO:0006272 all species →	Biological Process	leading strand elongation	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0019985 all species →	Biological Process	translesion synthesis	Interproscan
GO:0043626 all species →	Cellular Component	PCNA complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04802	PCNA; proliferating cell nuclear antigen	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.