Gene detail

Detailed information of evm.model.contig_19470.4 in Platygyra sinensis

Genomic Location: contig_19470:52232...65534
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_19470.4

ATGCCGTGGAGCTCGCAGATTGAAGGCCCTTCTCCTAACAACACATTCGGGTTCAAGGTCACTCAGGTGAACCTTAAAGACGCCAAGGCTCTTCACGAGGTACAGCATTTGACTCTGTTCAGCTTAGAGCTTCATGTAAGAACAAGGCGTGACGCGAGGCCAGACCCGGAGTTCGATCCTATCTGTGCGATATTTTATTACATTCAAACCGACTCCTCTCTCGCTTCTGGGAAAAACAAAATCACTGGAATTATTTGCGTAGATTCAGAGTCCTTTAAGATTACTAGTTCTAAAACTGAGAACAAGGACAGGAGTGTTTCCAACGCCGATTCCTCAGCATTGTTGTCGCCCTCCTCACACGCAGTGGCGTCTACCTCCAGCACCAACAACATATCTGTGTCAAGAACTGCGCAAAACCCTAACACTTCTCATCTGAGACCTTTGTTATCTCGTTCAGGAGTCACGGATCACGAAGTACAATATGTAGCTGAAGAAAAAGACCTCTTTCCTGCTTTGCTCAGAATTATCCGTAAATGGGACCCGGATATTTTGATAGGTTATGAGGTACAGATGTTTTCGTGGGGTTTTCTCCTCGAGAGGGCATTGACCTTCGAAATTGACCTTTGCACGTGGCTGTCCCGCGTCAAAGGCTCGTCCTCTGCCAGTAACATGGACGCTGAGAAAGATCAGTGGGGCGCTGCGCATACCTCTGAGATTAAGATCGCTGGACGGATTATTTTGAATGTTTGGAGGCTCATGAGACATGAGGTACGATCTCAAAGTCTGAAAACACAAAACAAAGAAAGTTTACAGAGTTTTGCTGCTTTTGCCGCTCAGAGCTCAGTCTCCGAGAATTCACTTAGCAGAGCCGTGGTTAGGGTTACGCTAAATAGCTACTCGTTTGAGAACGTAGCGTTTCACGTTCTTCACGAACGCATCCCGCTGTACACGTTTCGCACACTGTCGGACTGGTGGGACCAAAGAACTTCCCTCAACCGCTGGCGAACAGTCGACCATTACGTCCGACGTTGCCGTGGTAATGTCAGGATTCTTGAATCCGTGGATTTCATTGGTCGGACCAGTGAGCTGGCAAGGCTTTTTGGTATCTTATTCTTTTCCGTGATATGCCGTGGATCGCAGTACCGCGTCGAGTCAATGATGTTGAGGATTGCCAAGCCGATGAACTACATCGCAGTCTCTCCTAGTGTCGAACAACGTGGGCTAATGCGAGCTCCAGAAACAATACCATTGGTGATGGAGCCGGAGTCCCGTTTCTACAGCGATCCAGTCCTGGTCCTAGATTTCCAGTCTCTGTATCCCTCCATGATCATTGCGTACAACTACTGCTTCTCCACCTGCCTGGGGCGAGTTAGCTGTCTGTCAGAGTATGGTGAATTTAAGTTCGGTGCAACTTCTCTGTGTGTTCCTCCAAGCCTTCTCAAGAAACTTGAAGGTGACATCCATGTCTCTCCAAGCGGCATCGCGTTTGTGAAATCCAACGTAAGAAGAGGCATTCTCCCCAGTATGTTGGACGAGATTCTTCAGACGCGAATCATGGTGAAGGCGTCAATGAAGAGATGGAAAAGCGACAAATCTCTCGGCCGAATGCTGGACGCTCGTCAACTGGGTTTGAAACTGATCGCCAATGTGACATTTGGGTACACGTCAGCGCATTACTCTGGCAGAATGCCTTGTGTGGAGATCGGTGATTCTATCGTGCGAAAGGCACGCGAGACCCTGGAACGAGCCATAGATCTTGTCAATAACACCTCGCGTTGGGGCGCGCGAGTCGTGTACGGTGATACAGACAGTTTGTTTGTGTTGCTGAAGGGTGCGACCAAAGAACAGGCGTTCAATATTGGTAAAGACATTGTGGATACTGTTACAGCGATGAATCCGAAGCCAGTCAAACTCAAGTTTGAAAAGGTTTATCTTCCATGTGTGTTACAAACCAAGAAGCGTTATGTTGGATACATGTACGAGACTCTAGATCAGAAGGAGCCTGTATTTGACGCTAAAGGAATCGAGACGGTGCGAAGAGACTCGTGCCCTGCAGTAGCAAAGGTACTTGAAAAGTCGCTGCGTTTCTTATTCGAAACACGTGATCTGTCTTTGATTAAGAAGTTTGTTCAGCGACAGTGTACAAAATTGATGGACGGACGCGCCAGTCTTCAGGACTTCACTTTCGCAAAAGAATACCGCGGAATGAAGAACTACAAACCAGGGGCATGTGTACCAGCTCTGGAGCTGACTAGACGCATGCTCAGAGAGGACCGCAGGTCAGAGCCCAGAGTGGGAGAAAGAGTCCCGTATGTAGTGGTGTATGGTAGTCCTGGTTTGCCTTTGATTCAGCTCGTGAGAAGACCCCATGAAGTGCTTCAGGATCCCAGCCTTCGATTGAACGCATCTTACTACATCACCAAACAGATCTTACCACCGCTCAATCGTGTCTTCTCTCTCATTGGCTTGGACGTGTTCACGTGGTACGCAGAGCTCCCGCGTGTTGTGCGCGTAGCACAGATGCCCACGGACCCAGGAGACAGAAAAAAGGGAACTATTTCCCAGTACTTCTCTACCATGACGTGCCCAGTTTGTCAAGAACTTACTCCAGCAGATCTGTGCGCCAAATGTCGGGCGAGGCCCCAGCTGTCAGCTGTTTCTCTTGCAAGCCGCATGCGCAAATGGGAGCGAACTCACCAACATTTAGCAGAGATATGTTACAGCTGTTGCGGATCACGTGATACCAAGCTAAGTTGCGTGTCGTTGGACTGCCCGGTGTTTTACAAACTCGTGCTGTGCACACGTGACCTGAAGTCATCCCAACATTTCAGACGGATCCTGGAAAGCTTGTAG

Transcript

evm.model.contig_19470.4

ATGCCGTGGAGCTCGCAGATTGAAGGCCCTTCTCCTAACAACACATTCGGGTTCAAGGTCACTCAGGTGAACCTTAAAGACGCCAAGGCTCTTCACGAGGTACAGCATTTGACTCTGTTCAGCTTAGAGCTTCATGTAAGAACAAGGCGTGACGCGAGGCCAGACCCGGAGTTCGATCCTATCTGTGCGATATTTTATTACATTCAAACCGACTCCTCTCTCGCTTCTGGGAAAAACAAAATCACTGGAATTATTTGCGTAGATTCAGAGTCCTTTAAGATTACTAGTTCTAAAACTGAGAACAAGGACAGGAGTGTTTCCAACGCCGATTCCTCAGCATTGTTGTCGCCCTCCTCACACGCAGTGGCGTCTACCTCCAGCACCAACAACATATCTGTGTCAAGAACTGCGCAAAACCCTAACACTTCTCATCTGAGACCTTTGTTATCTCGTTCAGGAGTCACGGATCACGAAGTACAATATGTAGCTGAAGAAAAAGACCTCTTTCCTGCTTTGCTCAGAATTATCCGTAAATGGGACCCGGATATTTTGATAGGTTATGAGGTACAGATGTTTTCGTGGGGTTTTCTCCTCGAGAGGGCATTGACCTTCGAAATTGACCTTTGCACGTGGCTGTCCCGCGTCAAAGGCTCGTCCTCTGCCAGTAACATGGACGCTGAGAAAGATCAGTGGGGCGCTGCGCATACCTCTGAGATTAAGATCGCTGGACGGATTATTTTGAATGTTTGGAGGCTCATGAGACATGAGGTACGATCTCAAAGTctgaaaacacaaaacaaagaaagtttaCAGAGTTTTGCTGCTTTTGCCGCTCAGAGCTCAGTCTCCGAGAATTCACTTAGCAGAGCCGTGGTTAGGGTTACGCTAAATAGCTACTCGTTTGAGAACGTAGCGTTTCACGTTCTTCACGAACGCATCCCGCTGTACACGTTTCGCACACTGTCGGACTGGTGGGACCAAAGAACTTCCCTCAACCGCTGGCGAACAGTCGACCATTACGTCCGACGTTGCCGTGGTAATGTCAGGATTCTTGAATCCGTGGATTTCATTGGTCGGACCAGTGAGCTGGCAAGGCTTTTTGGTATCTTATTCTTTTCCGTGATATGCCGTGGATCGCAGTACCGCGTCGAGTCAATGATGTTGAGGATTGCCAAGCCGATGAACTACATCGCAGTCTCTCCTAGTGTCGAACAACGTGGGCTAATGCGAGCTCCAGAAACAATACCATTGGTGATGGAGCCGGAGTCCCGTTTCTACAGCGATCCAGTCCTGGTCCTAGATTTCCAGTCTCTGTATCCCTCCATGATCATTGCGTACAACTACTGCTTCTCCACCTGCCTGGGGCGAGTTAGCTGTCTGTCAGAGTATGGTGAATTTAAGTTCGGTGCAACTTCTCTGTGTGTTCCTCCAAGCCTTCTCAAGAAACTTGAAGGTGACATCCATGTCTCTCCAAGCGGCATCGCGTTTGTGAAATCCAACGTAAGAAGAGGCATTCTCCCCAGTATGTTGGACGAGATTCTTCAGACGCGAATCATGGTGAAGGCGTCAATGAAGAGATGGAAAAGCGACAAATCTCTCGGCCGAATGCTGGACGCTCGTCAACTGGGTTTGAAACTGATCGCCAATGTGACATTTGGGTACACGTCAGCGCATTACTCTGGCAGAATGCCTTGTGTGGAGATCGGTGATTCTATCGTGCGAAAGGCACGCGAGACCCTGGAACGAGCCATAGATCTTGTCAATAACACCTCGCGTTGGGGCGCGCGAGTCGTGTACGGTGATACAGACAGTTTGTTTGTGTTGCTGAAGGGTGCGACCAAAGAACAGGCGTTCAATATTGGTAAAGACATTGTGGATACTGTTACAGCGATGAATCCGAAGCCAGTCAAACTCAAGTTTGAAAAGGTTTATCTTCCATGTGTGTTACAAACCAAGAAGCGTTATGTTGGATACATGTACGAGACTCTAGATCAGAAGGAGCCTGTATTTGACGCTAAAGGAATCGAGACGGTGCGAAGAGACTCGTGCCCTGCAGTAGCAAAGGTACTTGAAAAGTCGCTGCGTTTCTTATTCGAAACACGTGATCTGTCTTTGATTAAGAAGTTTGTTCAGCGACAGTGTACAAAATTGATGGACGGACGCGCCAGTCTTCAGGACTTCACTTTCGCAAAAGAATACCGCGGAATGAAGAACTACAAACCAGGGGCATGTGTACCAGCTCTGGAGCTGACTAGACGCATGCTCAGAGAGGACCGCAGGTCAGAGCCCAGAGTGGGAGAAAGAGTCCCGTATGTAGTGGTGTATGGTAGTCCTGGTTTGCCTTTGATTCAGCTCGTGAGAAGACCCCATGAAGTGCTTCAGGATCCCAGCCTTCGATTGAACGCATCTTACTACATCACCAAACAGATCTTACCACCGCTCAATCGTGTCTTCTCTCTCATTGGCTTGGACGTGTTCACGTGGTACGCAGAGCTCCCGCGTGTTGTGCGCGTAGCACAGATGCCCACGGACCCAGGAGACAGAAAAAAGGGAACTATTTCCCAGTACTTCTCTACCATGACGTGCCCAGTTTGTCAAGAACTTACTCCAGCAGATCTGTGCGCCAAATGTCGGGCGAGGCCCCAGCTGTCAGCTGTTTCTCTTGCAAGCCGCATGCGCAAATGGGAGCGAACTCACCAACATTTAGCAGAGATATGTTACAGCTGTTGCGGATCACGTGATACCAAGCTAAGTTGCGTGTCGTTGGACTGCCCGGTGTTTTACAAACTCGTGCTGTGCACACGTGACCTGAAGTCATCCCAACATTTCAGACGGATCCTGGAAAGCTTGTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00136 all species →	DNA_pol_B	DNA polymerase family B	Family	Interproscan
PF03104 all species →	DNA_pol_B_exo1	DNA polymerase family B, exonuclease domain	Family	Interproscan
PF14260 all species →	zf-C4pol	C4-type zinc-finger of DNA polymerase delta	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR017964 all species →	Conserved_site	DNA-directed DNA polymerase, family B, conserved site	Interproscan
IPR006134 all species →	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan
IPR023211 all species →	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR042087 all species →	Homologous_superfamily	DNA polymerase family B, thumb domain	Interproscan
IPR006133 all species →	Domain	DNA-directed DNA polymerase, family B, exonuclease domain	Interproscan
IPR025687 all species →	Domain	C4-type zinc-finger of DNA polymerase delta	Interproscan
IPR006172 all species →	Family	DNA-directed DNA polymerase, family B	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR030559 all species →	Family	DNA polymerase zeta catalytic subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45812 all species →	DNA POLYMERASE ZETA CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0016035 all species →	Cellular Component	zeta DNA polymerase complex	Interproscan
GO:0019985 all species →	Biological Process	translesion synthesis	Interproscan
GO:0042276 all species →	Biological Process	error-prone translesion synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02350	REV3L, POLZ; DNA polymerase zeta	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.