Gene detail

Detailed information of evm.model.contig_19498.3 in Platygyra sinensis

Genomic Location: contig_19498:17297...22749
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01149 all species →	Fapy_DNA_glyco	Formamidopyrimidine-DNA glycosylase N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012319 all species →	Domain	Formamidopyrimidine-DNA glycosylase, catalytic domain	Interproscan
IPR035937 all species →	Homologous_superfamily	MutM-like, N-terminal	Interproscan
IPR010979 all species →	Homologous_superfamily	Small ribosomal subunit protein uS13-like, H2TH	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22993 all species →	FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003906 all species →	Molecular Function	DNA-(apurinic or apyrimidinic site) endonuclease activity	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0019104 all species →	Molecular Function	DNA N-glycosylase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_19498.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.