Gene detail

Detailed information of evm.model.contig_19498.6 in Platygyra sinensis

Genomic Location: contig_19498:32844...43109
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09292 all species →	Neil1-DNA_bind	Endonuclease VIII-like 1, DNA bind	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010979 all species →	Homologous_superfamily	Small ribosomal subunit protein uS13-like, H2TH	Interproscan
IPR015371 all species →	Domain	Endonuclease VIII-like 1, DNA binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22993 all species →	FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003906 all species →	Molecular Function	DNA-(apurinic or apyrimidinic site) endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0019104 all species →	Molecular Function	DNA N-glycosylase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10567	NEIL1; endonuclease VIII-like 1	EC:3.2.2.- EC:4.2.99.18	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.