Gene detail

Detailed information of evm.model.contig_19852.22 in Platygyra sinensis

Genomic Location: contig_19852:154765...159293
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01080 all species →	Presenilin	Presenilin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001108 all species →	Family	Peptidase A22A, presenilin	Interproscan
IPR042524 all species →	Homologous_superfamily	Presenilin, C-terminal	Interproscan
IPR006639 all species →	Family	Presenilin/signal peptide peptidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10202 all species →	PRESENILIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004175 all species →	Molecular Function	endopeptidase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0006509 all species →	Biological Process	membrane protein ectodomain proteolysis	Interproscan
GO:0006816 all species →	Biological Process	calcium ion transport	Interproscan
GO:0007220 all species →	Biological Process	Notch receptor processing	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016324 all species →	Cellular Component	apical plasma membrane	Interproscan
GO:0016485 all species →	Biological Process	protein processing	Interproscan
GO:0030018 all species →	Cellular Component	Z disc	Interproscan
GO:0030426 all species →	Cellular Component	growth cone	Interproscan
GO:0031594 all species →	Cellular Component	neuromuscular junction	Interproscan
GO:0035253 all species →	Cellular Component	ciliary rootlet	Interproscan
GO:0042500 all species →	Molecular Function	aspartic endopeptidase activity, intramembrane cleaving	Interproscan
GO:0042987 all species →	Biological Process	amyloid precursor protein catabolic process	Interproscan
GO:0043025 all species →	Cellular Component	neuronal cell body	Interproscan
GO:0043066 all species →	Biological Process	negative regulation of apoptotic process	Interproscan
GO:0043198 all species →	Cellular Component	dendritic shaft	Interproscan
GO:0045121 all species →	Cellular Component	membrane raft	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0050435 all species →	Biological Process	amyloid-beta metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_19852.22.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.