Gene detail

Detailed information of evm.model.contig_20134.3 in Platygyra sinensis

Genomic Location: contig_20134:21711...33739
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_20134.3

ATGGCGGAAAAGAATGAACCTGAATTTGTGTCACAGAAAAAATACCCTTCAAATCAGTCATTATTTCCGATTCTGGGCTCTCAAAATATATCAGTTGGGACATCCCGTGGCCTTACTTTTCCGTGCGCTTCTTCTAACGTGGAAGCACAGTCTGAAGATGTCGATAAAGGAGTCAGCCAGCCAAGCTGGCTTAGGAATGAAAGCTACAAAGATGTCAGTTTATCTTTCCAAACTGACCAACATGAAATTGTTAACACAGATAGTAAACAGTACTCATCAGAACAAGCTGCCAAAGTGCATCAATTTGGACACAAAGGAAGTAAACGCACTCGTGTTGATATTTCTAGTTCAGATGAAGAGAGACAACTCTATCAGGAGAAGGGAATAAAAAAGGAATGTCCCAGCTCTACTGAAAAGGTCACAAAGCACCACAAAGACAAAAAGAAACATAAATCAAAAAAGAAACATAAGCATAAGTATGACAAATCTGAGTACAAGGAGCATGTCACTGAAGATGTTTGCAAACCAGATACAATTTGGATTGAAGAAGCAAATCTTGCTCCTGAGAAAGCTTTTAGACTTAACAAAAAACCTGACATGGCAAATCGAATGTATAACACACTGTATAGACTGGACATTGCTTTGTATAAGATGAGGTCAAATATGACTTGCCTTGGGCTCAGCAAACATCAAGTTATTGAGTTGACAGAACAGAAGGGAAAGAAAAAGAGAAAGACAAGAACTGTTGAAAGGTATTGGAATACTAATGATTTCCAAGTTCCAGAAAGCACCGAGAACATTTCTATAACACTGCCTAGTACCACAAAGAAACTGGATCAGAAAATTAATTTAGTGGATGGCAGAGGCTATGTTCCCCTGGAATTATCCTCTCAGGATGAGATGGTAAAAGATGATTCTCTCAGAAGAAAAGTGAAGGAATCAACTGCCATTAAAGATTCTCATGAATCTGAAATCGTGCAAAAGACTCGTGAGTTAAACAAGATTTTGCTAGGCAGCCCACAAGATATTCAGACTTGGCTGGCTCTTGTTGACTTTCAAGAAGAGATTGTCAGAAAAGAGGACTCTGTGAATTCAAGCTTTACAGCAACTCGTCGGGAAAGGAGGAATGCTGCCACAAAGACAATAATTGAAAAGAAGATTGCTGTTTTTGAGAAAGCTTTGCAAAAAAATCCAAACTCAGTTGAATTGATAGTGGGCCACTTAGATATTTGTAGTGAGATCATGGATGCTGAAGAACTGGTTCAGAAATGGAAAAGAGTCAGCTTTGTCCATCCTAATAATACTCTGCTGTGGAGGCATTACTTGTTGTTCATGCAGTCCAGATTCTCGGTGTTTTCATTTAGCAAGACTGCATCAGTATATGGCAAGTGTTTGAGCACTCTTTCGTCGATCAAGGAAGAGACTTTTGCATCTCACCGGGCTGAAGGCAATCTGGAGAATGAAATGGTAGATTTGTTCATCAGGGAATGCCAATTTACAAGGCAATCAGGTCACACAGAAAAAGCCATTGCCTGCTTCCAGGCCATGATTGAATTAAACTGTTTCTGCTCACATGATCTTGAGAAGAACACTCCTGTGACTGGACAGATAGCTTTCCTGGAAACTTTCTGGGATAGTGGACAACCAAGGTTTGGTGAAGATGGTGCAAAAGGTTGGAAGTCCTGGATGGCTGCAGAACACAAGGCTGAGGTGGCAATTGACATCAAGAAGATTTTTAAGTCAAATTTCACCAGTGCCACAGATGAGAGTGATTCTCTTGATGATAATGATGATGAGTTTGAAGTTGATAAAGATAAGCCTCTGTGGGAGAACTGGGGACAAGTTGAATTATCCAGACAGAGAAGACATTTATTGCCATGGCAACCAGATGTCAAAAAGGATCAAACAGAGGATGATTGTGATGATGCTGAAAGGCTTGTTTTGTTTGATGACATCAGTTCAAGTTTGTTCAAAATCAGTGATCCTAAGAACAAGCTTAAGCTTGTCTTGTCTTTCTTGAAGTTACTGGGAGTGTCGGTGCCCTGTGTGAGCTCATCAACAAATGCCGACGTACAAAGATTCTTGAACATCTCCTTAGAGCATGAGTCACAGCTGTTAAAGCCGGGCAACTGCACCATGTCTCAATTCCTTGGTCTGTGGCAGTCATACCACTGGGATGACGGCAACTCCAGCAACACAACTGACAAACAGTGGCCCTCGTCAGAAGCTTTGAACCTTACAAGAAATATCTTTGTGCAAATCCTGCCAGTATTTGAAGGAGCAACGAGAAGTTTCCTAATTGTGTTGTGGCTTTGGTTTGAGTTTGGTGTCACCCAGAAGGTGCCATCTTTAAAAGAGAGTAAAAAGAAGTTTAAAGATGTAAGGAAGTTAGCCAAAAGCCTCCTTAAGCAACCAGAAAACAGGAATGACCTAACACTGTGGAAAGCTTTTGCCGAGATAGAGTGGTTATCTGGTAACACTGATGAAGCTCGCAGAGTGTTTGACTCCACTCTCATTATGGGTGGTGAAATGTTTTCTGATGAACAGGGCAGAAGGGCAGCTTTGGCACCTCTTGTCAGGTCATATGCTGAGCTTGAAACTGGTGTCACTGAAACCTCTGAAGAGTTGCAGGCTATGTCAAGTGAGGAAAACAAGAGAGCGTTACAGATCTTGACTGCATTTGCTGAGGGAGCAAAGTTTCAATCTTCCGCATCCAACTCATCAACTACTGACGTGTCAGCTGTTCGACTACTGAAGTCTCGTAGAATCTACCAGAAATTTCACCGAGGAATTACTGAAACAACTGAGGCGTCCCAAGGAAAGAGAGAGTTGCTTGACTGCGACATTGCCTCTGGAAGTCTGGCAGTTCATCTTGAAGCTTGTAGTGTTTTGTTTGAATACTTGAGCACTGGTATTCAAGGTGTATTGTCTATGTGTAATGATATTATTTCAGGCATTTCACTTGATCAAGTTCAACTCCCTGAGATGGACATTGAACTCATTCTCAGCTGTTACATCAGGCTGTTTAGATTTCATTGCACACATGGCAGAACACTGCCCTTGAAAGACACTAGAAACATTGTACACTTTGCACTGGAGAAATTTCCAGATAATCCTGAGTTCCTGTTGTTCTACATTCAGCGTGAATCCAAGTCAGTTCTTACCGGTGAGATCAGAAGGATTCTTGATAAAGCTGCCCAACAGGCCTCCACACCTGTTCCCTGGATCTTTGCAATTTATTATGAGCAGCTAAGAGCCAAGTCCCTGGTATCAGTCATAGAATGCAATGATCTCTCTGCTTTAGTGTCACAAGAAAGCCGAGCAGCTGTTACTTCTCTTCCAGTCACTGGTGTAGTCCATCGTCAATGTTCTCTGTTTGAAAGAGCAATCTCCTGTCCTTCTGGGAGACATTGTGTGGCATTGTGGAGAATGTTCATGCAGTTTGAATCAAAACTTGGGAAAGACAAAGTCAAGTCAGTGTTCTACCAGGCTCTTCAGAGTTGTCCCTGGGCTAAGGTTTTGTACATGGATGCAGTGCAGCACATACCAGATGACATTCAAGACATTGCTGATTTAATGACTGAGAAAGAAATCAGGCTGCATGCACCGCTTGAAGAAATTGAACTCCTTCTTCAAGAGTCATAA

Transcript

evm.model.contig_20134.3

atggcggaaaagAATGAACCTGAATTTGTGTCACAGAAAAAATACCCTTCAAATCAGTCATTATTTCCGATTCTGGGCTCTCAAAATATATCAGTTGGGACATCCCGTGGCCTTACTTTTCCGTGCGCTTCTTCTAACGTGGAAGCACAGTCTGAAGATGTCGATAAAGGAGTCAGCCAGCCAAGCTGGCTTAGGAATGAAAGCTACAAAGATGTCAGTTTATCTTTCCAAACTGACCAACATGAAATTGTTAACACAGATAGTAAACAGTACTCATCAGAACAAGCTGCCAAAGTGCATCAATTTGGACACAAAGGAAGTAAACGCACTCGTGTTGATATTTCTAGTTCAGATGAAGAGAGACAACTCTATCAGGAGAAGggaataaaaaaggaatgtCCCAGCTCTACTGAAAAGGTCACAAAGCACCACAAAGacaaaaagaaacataaatcaaaaaagaaacataagcataagtatGACAAATCTGAGTACAAGGAGCATGTCACTGAAGATGTTTGCAAACCAGATACAATTTGGATTGAAGAAGCAAATCTTGCTCCTGAGAAAGCTTTTAGACTTAACAAAAAACCTGACATGGCAAATCGAATGTATAACACACTGTATAGACTGGACATTGCTTTGTATAAGATGAGGTCAAATATGACTTGCCTTGGGCTCAGCAAACATCAAGTTATTGAGTTGACAGAAcagaagggaaagaaaaagagaaagacaaGAACTGTTGAAAGGTATTGGAATACTAATGATTTCCAAGTTCCAGAAAGCACCGAGAACATTTCTATAACACTGCCTAGTACCACAAAGAAACTGGATCAGAAAATTAATTTAGTGGATGGCAGAGGCTATGTTCCCCTGGAATTATCCTCTCAGGATGAGATGGTAAAAGATGATTCTCTCAGAAGAAAAGTGAAGGAATCAACTGCCATTAAAGATTCTCATGAATCTGAAATCGTGCAAAAGACTCGTGAGTTAAACAAGATTTTGCTAGGCAGCCCACAAGATATTCAGACTTGGCTGGCTCTTGTTGACTTTCAAGAAGAGATTGTCAGAAAAGAGGACTCTGTGAATTCAAGCTTTACAGCAACTCGTCGGGAAAGGAGGAATGCTGCCACAAAGACAATAATTGAAAAGAAGATTGCTGTTTTTGAGAAAGCTTTGCAAAAAAATCCAAACTCAGTTGAATTGATAGTGGGCCACTTAGATATTTGTAGTGAGATCATGGATGCTGAAGAACTGGTTCAGAAATGGAAAAGAGTCAGCTTTGTCCATCCTAATAATACTCTGCTGTGGAGGCATTACTTGTTGTTCATGCAGTCCAGATTCTCGGTGTTTTCATTTAGCAAGACTGCATCAGTATATGGCAAGTGTTTGAGCACTCTTTCGTCGATCAAGGAAGAGACTTTTGCATCTCACCGGGCTGAAGGCAATCTGGAGAATGAAATGGTAGATTTGTTCATCAGGGAATGCCAATTTACAAGGCAATCAGGTCACACAGAAAAAGCCATTGCCTGCTTCCAGGCCATGATTGAATTAAACTGTTTCTGCTCACATGATCTTGAGAAGAACACTCCTGTGACTGGACAGATAGCTTTCCTGGAAACTTTCTGGGATAGTGGACAACCAAGGTTTGGTGAAGATGGTGCAAAAGGTTGGAAGTCCTGGATGGCTGCAGAACACAAGGCTGAGGTGGCAATTGACATCAAGAAGATTTTTAAGTcaaatttcaccagtgccacagATGAGAGTGATTCtcttgatgataatgatgatgagtTTGAAGTTGATAAAGATAAGCCTCTGTGGGAGAACTGGGGACAAGTTGAATTATCCAGACAGAGAAGACAtttattgccatggcaaccagaTGTCAAAAAGGATCAAACAGAGGATGATTGTGATGATGCTGAAAGGCTTGTTTTGTTTGATGACATCAGTTCAAGTTTGTTCAAAATCAGTGATCCTAAGAACAAGCTTAAGCTTGTCTTGTCTTTCTTGAAGTTACTGGGAGTGTCGGTGCCCTGTGTGAGCTCATCAACAAATGCCGACGTACAAAGATTCTTGAACATCTCCTTAGAGCATGAGTCACAGCTGTTAAAGCCGGGCAACTGCACCATGTCTCAATTCCTTGGTCTGTGGCAGTCATACCACTGGGATGACGGCAACTCCAGCAACACAACTGACAAACAGTGGCCCTCGTCAGAAGCTTTGAACCTTACAAGAAATATCTTTGTGCAAATCCTGCCAGTATTTGAAGGAGCAACGAGAAGTTTCCTAATTGTGTTGTGGCTTTGGTTTGAGTTTGGTGTCACCCAGAAGGTGCCATCTTTAAAAGAGAGTAAAAAGAAGTTTAAAGATGTAAGGAAGTTAGCCAAAAGCCTCCTTAAGCAACCAGAAAACAGGAATGACCTAACACTGTGGAAAGCTTTTGCCGAGATAGAGTGGTTATCTGGTAACACTGATGAAGCTCGCAGAGTGTTTGACTCCACTCTCATTATGGGTGGTGAAATGTTTTCTGATGAACAGGGCAGAAGGGCAGCTTTGGCACCTCTTGTCAGGTCATATGCTGAGCTTGAAACTGGTGTCACTGAAACCTCTGAAGAGTTGCAGGCTATGTCAAGTGAGGAAAACAAGAGAGCGTTACAGATCTTGACTGCATTTGCTGAGGGAGCAAAGTTTCAATCTTCCGCATCCAACTCATCAACTACTGACGTGTCAGCTGTTCGACTACTGAAGTCTCGTAGAATCTACCAGAAATTTCACCGAGGAATTACTGAAACAACTGAGGCGTCCCAAGGAAAGAGAGAGTTGCTTGACTGCGACATTGCCTCTGGAAGTCTGGCAGTTCATCTTGAAGCTTGTAGTGTTTTGTTTGAATACTTGAGCACTGGTATTCAAGGTGTATTGTCTATGTGTAATGATATTATTTCAGGCATTTCACTTGATCAAGTTCAACTCCCTGAGATGGACATTGAACTCATTCTCAGCTGTTACATCAGGCTGTTTAGATTTCATTGCACACATGGCAGAACACTGCCCTTGAAAGACACTAGAAACATTGTACACTTTGCACTGGAGAAATTTCCAGATAATCCTGAGTTCCTGTTGTTCTACATTCAGCGTGAATCCAAGTCAGTTCTTACCGGTGAGATCAGAAGGATTCTTGATAAAGCTGCCCAACAGGCCTCCACACCTGTTCCCTGGATCTTTGCAATTTATTATGAGCAGCTAAGAGCCAAGTCCCTGGTATCAGTCATAGAATGCAATGATCTCTCTGCTTTAGTGTCACAAGAAAGCCGAGCAGCTGTTACTTCTCTTCCAGTCACTGGTGTAGTCCATCGTCAATGTTCTCTGTTTGAAAGAGCAATCTCCTGTCCTTCTGGGAGACATTGTGTGGCATTGTGGAGAATGTTCATGCAGTTTGAATCAAAACTTGGGAAAGACAAAGTCAAGTCAGTGTTCTACCAGGCTCTTCAGAGTTGTCCCTGGGCTAAGGTTTTGTACATGGATGCAGTGCAGCACATACCAGATGACATTCAAGACATTGCTGATTTAATGACTGAGAAAGAAATCAGGCTGCATGCACCGCTTGAAGAAATTGAACTCCTTCTTCAAGAGTCATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08424 all species →	NRDE-2	NRDE-2, necessary for RNA interference	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003107 all species →	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013633 all species →	Family	siRNA-mediated silencing protein NRDE-2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13471 all species →	TETRATRICOPEPTIDE-LIKE HELICAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0031048 all species →	Biological Process	regulatory ncRNA-mediated heterochromatin formation	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:1902369 all species →	Biological Process	negative regulation of RNA catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26109	NRDE2; nuclear exosome regulator NRDE2	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.