Gene detail

Detailed information of evm.model.contig_20338.2 in Platygyra sinensis

Genomic Location: contig_20338:12651...14951
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_20338.2

ATGGAAGACCAGGAAAATAAAAGCATTTCATCCAAAATGTTTCACGCATTTTCCAGAAAGGATCGACGAAAATATCTCATTTATTTCCCCGTTGCGACCATGCTGTGGCTCCTTGGGTCTTGGAATATAAGCTTTGCATGGATTATTTTGTTTGTAGCCATCTACGTACTTGGGAAATATCACTTAGAAGTTAACAAACGGAAGCGAAGAAACTTACGCGAAACGTCCTACGAACCGAACCTCGCGAAGATCAAAACATTTCCGATACCACCGGTCTATTTGTCAGAGAGCGAAAATGCGATGTGGCTGAATAATATTATCAACAAAATGTGGCCATTCATAGAGGGTATGGTTAGAAGGATCATTAAAGACAGTGTGGAGCCTGAGATTCAAAAGAAGCTTCCCGCCGCCTTTAAGACCCTTTACTTCGACAAGATCGAGTTGGGCCAAAAGCCTCCCTTTATTGGTAATATAAGATCGTATTCTAGAGGCAGTTGTTCTGCGCGAGCTTCAGAATTCATAATGGACGTAGATTTCACTTACAATGGGGACGCGCAGCTGAAACTTACAGTGAAGAACGTCAAGCTGGGAATTTCAGACTTTCAAATTCACGGACCGCTTCGAATTATTCTAAAGCCTCTCTTGACGGATCAGTCTATAGTTGGAGGATTAACTGTGTTTTTTCTGAAGAGGCCGAAAATCGCATTTAATTTGACAAACTTGTTAAATGTGTTGGATTTCCCCGGATTGAAGAAAACCTTGCGAGGAATTGTGGATGACGTCATCGCCAGCTTCGCGGTTATACCCAATCGGATCGTAATTCCCTTGGCGGCAAGCGTGGATCCCAGTGACCTGCAGTATCCAATCCCCGAGGGTTTACTGCGCGTCCAAATGTTGGAAGCTCGGGAACTAGTGAAATCAGATTTTTCACTTATTGGCAAGGCCTCCCCAGATCCTTACGCCATCTTGGAAGTTGGCGCTCAAACATTTCGCACCGAAACAAAGAAAAACGATTCAAATCCCACATGGGAAGGAACTTTCGAGGCATTTGTGGATAATTCTGAGGGACAAGAACTTGAACTCTATATGTACGATCACGATCTTGCCTCGAAAGATTCTAAACTCGGTCACGTAGATTTTAAAATTCATTCCGTTGTCAAGGGTGGCGTTCAAGACATCTGGTTGCCGTTGGAAAAAGCCAAGAAAGGCAAGGTCCACTTGCAGTTGGATTGGTTCGCTCTCAGCAGTGACCCACTGCATTTTAGATATACCAAAGAAAACGAAACCGTTGCCGTATTGATTGTTAAACTGATCAAAGCCCAAAATCTCCCGCGTCGCGCGAGGTCTCTGTTAGTGAGGAAAATCTTCTGTAGGGTATCCGTGGGAAATACGACGTTAGATAGTTTCTGCTCCTACGGGGATGACACGGAATGGGGACAATCCCTACGATTTTTACTAACCGATCCTCATGAAGAGGCTCACATCGATGTGATGGAAGGAAACAGCAGCAACAGCCTAGGGTCCTTAGTGTTCACTGTTCGAAAGCTGATAGAAGAACCGGAAATGACCCTTCAAGACCGCTTCTCGCTGCAAAGCGGAACCGGAAGTATCGACTGCAAGTTCATCCTCCGCGCATTGAAGGCTAGTGACACCTGTGACGCGACAACGCCCCTACTGATGGGCAGGAAGTTCAACACTGGCCTCGATAACGGAAACTATCTTCAGAGGGCAGATACCCCGACATTTACAGCAGAAGTCGAAGTTCAGGAAGAACCGTCCACCTCTGAGGACAGCTACAGCAGTGAAAATACCGAGAAAACATCCAGTAACGGTTCCTCACCCAGTGGAAGCATAGCCGATGACACTTCTAACGGGCAAAGTCCCGAGGCTTCGGGTCGGGACTACCTGTCCCGAGGAGAAGTCTCGTTGAAGTTAATCTACGATCATCGCAGAAACCGGCTTGTTGTGACTGTTCTTAATGCAACGAATTTATCGTCTTCAGAGCCCAAGTCGAAGACAAACCCTTATGTGCAAATAAAAATGCTTCCTTCTCATTCTAAGAAATCCACTCGCAAGACAAGTTCAATTGCTGGTACTCTTAATCCCATCTTTAACGAGACTTTGGAATACGTGATCGGACTTGATCAGCTGGCTGATAAGCAGCTTCATGTGGCGGTCAAAAACGAGCGTCTTGTCCAGTTACCAGGGAAACGAAGAGACCTAATCGGTCGTACTGCAGTAAAACTCTGTGAACTGAGTTTGTCGACTGGCGTAACAATGAACTGCGAAATAACAAAATGA

Transcript

evm.model.contig_20338.2

ATGGAAGACCAGGAAAATAAAAGCATTTCATCCAAAATGTTTCACGCATTTTCCAGAAAGGATCGACGAAAATATCTCATTTATTTCCCCGTTGCGACCATGCTGTGGCTCCTTGGGTCTTGGAATATAAGCTTTGCATGGattattttgtttgtagccaTCTACGTACTTGGGAAATATCACTTAGAAGTTAACAAACGGAAGCGAAGAAACTTACGCGAAACGTCCTACGAACCGAACCTCGCGAAGATCAAAACATTTCCGATACCACCGGTCTATTTGTCAGAGAGCGAAAATGCGATGTGGCTGAATAATATTATCAACAAAATGTGGCCATTCATAGAGGGTATGGTTAGAAGGATCATTAAAGACAGTGTGGAGCCTGAGATTCAAAAGAAGCTTCCCGCCGCCTTTAAGACCCTTTACTTCGACAAGATCGAGTTGGGCCAAAAGCCTCCCTTTATTGGTAATATAAGATCGTATTCTAGAGGCAGTTGTTCTGCGCGAGCTTCAGAATTCATAATGGACGTAGATTTCACTTACAATGGGGACGCGCAGCTGAAACTTACAGTGAAGAACGTCAAGCTGGGAATTTCAGACTTTCAAATTCACGGACCGCTTCGAATTATTCTAAAGCCTCTCTTGACGGATCAGTCTATAGTTGGAGGATTAACTGTGTTTTTTCTGAAGAGGCCGAAAATCGCATTTAATTTGACAAACTTGTTAAATGTGTTGGATTTCCCCGGATTGAAGAAAACCTTGCGAGGAATTGTGGATGACGTCATCGCCAGCTTCGCGGTTATACCCAATCGGATCGTAATTCCCTTGGCGGCAAGCGTGGATCCCAGTGACCTGCAGTATCCAATCCCCGAGGGTTTACTGCGCGTCCAAATGTTGGAAGCTCGGGAACTAGTGAAATCAGATTTTTCACTTATTGGCAAGGCCTCCCCAGATCCTTACGCCATCTTGGAAGTTGGCGCTCAAACATTTCGCaccgaaacaaagaaaaacgaTTCAAATCCCACATGGGAAGGAACTTTCGAGGCATTTGTGGATAATTCTGAGGGACAAGAACTTGAACTCTATATGTACGATCACGATCTTGCCTCGAAAGATTCTAAACTCGGTCACgtagattttaaaattcattcCGTTGTCAAGGGTGGCGTTCAAGACATCTGGTTGccgttggaaaaagccaagaaagGCAAGGTCCACTTGCAGTTGGATTGGTTCGCTCTCAGCAGTGACCCACTGCATTTTAGATATACCAAAGAAAACGAAACCGTTGCCGTATTGATTGTTAAACTGATCAAAGCCCAAAATCTCCCGCGTCGCGCGAGGTCTCTGTTAGTGAGGAAAATCTTCTGTAGGGTATCCGTGGGAAATACGACGTTAGATAGTTTCTGCTCCTACGGGGATGACACGGAATGGGGACAATCCCTACGATTTTTACTAACCGATCCTCATGAAGAGGCTCACATCGATGTGATGGAAGGAAACAGCAGCAACAGCCTAGGGTCCTTAGTGTTCACTGTTCGAAAGCTGATAGAAGAACCGGAAATGACCCTTCAAGACCGCTTCTCGCTGCAAAGCGGAACCGGAAGTATCGACTGCAAGTTCATCCTCCGCGCATTGAAGGCTAGTGACACCTGTGACGCGACAACGCCCCTACTGATGGGCAGGAAGTTCAACACTGGCCTCGATAACGGAAACTATCTTCAGAGGGCAGATACCCCGACATTTACAGCAGAAGTCGAAGTTCAGGAAGAACCGTCCACCTCTGAGGACAGCTACAGCAGTGAAAATACCGAGAAAACATCCAGTAACGGTTCCTCACCCAGTGGAAGCATAGCCGATGACACTTCTAACGGGCAAAGTCCCGAGGCTTCGGGTCGGGACTACCTGTCCCGAGGAGAAGTCTCGTTGAAGTTAATCTACGATCATCGCAGAAACCGGCTTGTTGTGACTGTTCTTAATGCAACGAATTTATCGTCTTCAGAGCCCAAGTCGAAGACAAACCCTTATGTGCAAATAAAAATGCTTCCTTCTCATTCTAAGAAATCCACTCGCAAGACAAGTTCAATTGCTGGTACTCTTAATCCCATCTTTAACGAGACTTTGGAATACGTGATCGGACTTGATCAGCTGGCTGATAAGCAGCTTCATGTGGCGGTCAAAAACGAGCGTCTTGTCCAGTTACCAGGGAAACGAAGAGACCTAATCGGTCGTACTGCAGTAAAACTCTGTGAACTGAGTTTGTCGACTGGCGTAACAATGAACTGCGaaataacaaaatga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF17047 all species →	SMP_LBD	Synaptotagmin-like mitochondrial-lipid-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR031468 all species →	Domain	Synaptotagmin-like mitochondrial-lipid-binding domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR051634 all species →	Family	Extended Synaptotagmin	Interproscan
IPR039010 all species →	Domain	Synaptotagmin, SMP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45761 all species →	EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005544 all species →	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0008429 all species →	Molecular Function	phosphatidylethanolamine binding	Interproscan
GO:0031210 all species →	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0031227 all species →	Cellular Component	obsolete intrinsic component of endoplasmic reticulum membrane	Interproscan
GO:0031234 all species →	Cellular Component	extrinsic component of cytoplasmic side of plasma membrane	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_20338.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.