Gene detail

Detailed information of evm.model.contig_20487.2 in Platygyra sinensis

Genomic Location: contig_20487:3035...4594
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06221 all species →	zf-C2HC5	Putative zinc finger motif, C2HC5-type	Domain	Interproscan
PF04266 all species →	ASCH	ASCH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039128 all species →	Family	Activating signal cointegrator 1-like	Interproscan
IPR009349 all species →	Domain	TRIP4/RQT4, C2HC5-type zinc finger	Interproscan
IPR007374 all species →	Domain	ASCH domain	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12963 all species →	THYROID RECEPTOR INTERACTING PROTEIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0072344 all species →	Biological Process	rescue of stalled ribosome	Interproscan
GO:0180022 all species →	Cellular Component	RQC-trigger complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23398	TRIP4; activating signal cointegrator 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.