Gene detail

Detailed information of evm.model.contig_21116.1 in Platygyra sinensis

Genomic Location: contig_21116:1490...10750
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_21116.1

GCCGCAGCCGAAGAGCAAGAAATGGAGAGATACGCAAAAGGATTGTCAGTCGATGTTGACAACATTATGTTAGTATCTGGTGCCACTCCTAATTGGTCCACTGCCCTTGCTGACTACAAAGAGGTCTTCACAGGAGAGGGCAAGTTAATAAGACCGTTTCGCCGTGATTCTGCCTTGTGCGAAAGAGTTGGTGAAACTAAAGCAGAAGCCATTGAAATCCATGACCAGTGGCTCATCGCCCTTTTTGAACGTTGTAAGAGCAAAGGCATTAAGCTAAACAAGGAGAAATGCAAGTTCTGCCTCTCCGAAGTTTCCTTTATGGGCCATTGCATCTCTGAAGAAGGCTTAAAGCCGGATCCAGCTAAGATCCAAGGGGTTCAGGAGATGCCCACCCCAGAAAGCAAGCAAGATGTGAAGAGACTACTTGGTATGGTTAACTACATGTACCTTCAGAAATTTGCTCCTAATCTCTCAGAAACCACTGCCCCAATGAGAGAGCTCCTCAAAGAAGAAAACCAGTTCCTGTGGGATGAGGAAGTTCAAGGTCGAAGTTTTAAACAGGTCAAGCAACTGATCGTAGAGTCTCCAGTACTTAAGTACTTTGATCCCAAAGCAGACACTGAACTCAAATATGATGCATCTGACAAAGGTCTTGGTGGGTGCCTCATGCAGGATGGCCAGCCAGTGGGCTATGCTTCAAGAGCGATGACATCTGCAGAAATCAACTATGCACAGATCGAAAAAGAACTTTTTGCCATTGTCTTTGGACTTAACGGTTCGAACAACACGAGAGGAGATGTAGAGAAGGATACAGAGAGTATAAACATGGTCCAGTACCTCCCAGTGTCCGAGACGACACAGAATATCATTTGCACTGCTACTGAATCAGACCCAGTCATGAAAGAACTCAAGACTACCATAAGAGAAGCTGTAGAAGTTATCAGGAAGCTTAAGTTGAAAGCACATCTAGCCAGGCATGGTATACTAGATCAAGTCATATCAGACAATGGACAGCCATTTGCATCTGATAGCTTTCAAGAGTTTTCCAGCACCTATGGTTTTGAACATGTGACCAGTTCCCCCCTGTACGCTCAGTCAAATGGAAAAGTGGAAAATGCTGTTAAGACAGCCGAATCACTCCTAGAGAAGGCAACTAAATCCCAGCGGGACCCATATCCGTCATTGTTAGATTGGAGGAACACTCCAACAGAAGGCCTTAACTCTCTCAGCAGCTCAGCAGCTACAGTATTTGGTCGACGAACGAAAACTCTCCTTCCCACCTCTAACCATCTACTGAAGCTCAAGATTCCAAAGGAAGTCCAGGACAAGTTGACCCTCAAGAGGGCAAAGCAGGCCATCTATTATGACAGAGGCACTAAAGAACTAGAAGAGTTTTTACCTGGGGACTTCGAATACAGCCGCAACAGTCCAAACTACGAAAGAAAAAGGACTGGACTCTTGCTAGAGTGGAAGGAAAAGTCAACATCAGATCTTACCAAGTCCGAACTGAAGATGGACGGGTATACAGAAGAAACAGGCGTCACCTCAGGCGCACACAAGAAACAACAGATAGCTGTTGTCACAAATGGAGAAGCATATGAAGCAAAAAGTACAAACTACAAGGAGAGTTTATACCGACCACCAACCAGTGAAGAGATTAATGCCCTCAAAGAAACTGAGAACCTTTTTAAGTCTAGTCTTTTTCGTATGCAGGTAACTGAACTTCTATCTGAAGTGCAACCAAATAAAGACAGGAATAAAGCCCTGGATGATGTTTTGCATGAATTGAATACTCTACTGCTGTCTTTACCTGACGGGAAAAAGGAACAACAGGTGGCAGACCACTCATGCCTCCCAAGAGGAATCAAATTTCCTCTCCCCTCCACCCCCTCTCCTGTGAAAGGAAAGTTCTGTTTTCGGAAACCAGTAAGTGTCAAAGTTGTTGGGAGTTATCTTCTTGGCACAGTAACAAAACCACACTTGAATGTGGATATTGCTATGGAGATGCCAAAGGAATGTTTTCAACCAAAGGATTATCTGAATCTTAGATATCACCACAAACGAGCTCTGTACCTGTGTATCATTGCTGCACATTTAACAAAGAGTTCATTGTTTGAAAGTGTTCAATTTACACACATGAATGGTGAAGTATTGAGACCAATCCTTCTGCTCAAACCTAAAGGTAAAGCTGGGAAACGGTTTGTTATCAAATTGCATCCTTGTTTATCAGTGGGTACATTCAAACCTCAGAGGTTTTCTCCAAAAAAGAATAATGTCAGACAGAATTGGTTCAATGGTGAGGAGGGCGTGGCAGAAGATGGGTCTGACACAGGAATACCAACACCTCATTACAATGCCTCAGTGTTGTCGGACATGTTCTTGGAGAAGCACCTTCACCATTTGTACAAGTGCATCACTGATTTCCCAGGAATGAAGGACGCAGTGGCTCTAATTAAAGTTTGGCTGCATCAGCGTGAACTTGATCAG

Transcript

evm.model.contig_21116.1

GCCGCAGCCGAAGAGCAAGAAATGGAGAGATACGCAAAAGgattgtcagtcgatgttgacAACATTATGTTAGTATCTGGTGCCACTCCTAATTGGTCCACTGCCCTTGCTGACTACAAAGAGGTCTTCACAGGAGAGGGCAAGTTAATAAGACCGTTTCGCCGTGATTCTGCCTTGTGCGAAAGAGTTGGTGAAACTAAAGCAGAAGCCATTGAAATCCATGACCAGTGGCTCATCGCCCTTTTTGAACGTTGTAAGAGCAAAGGCATTAAGCTAAACAAGGAGAAATGCAAGTTCTGCCTCTCCGAAGTTTCCTTTATGGGCCATTGCATCTCTGAAGAAGGCTTAAAGCCGGATCCAGCTAAGATCCAAGGGGTTCAGGAGATGCCCACCCCAGAAAGCAAGCAAGATGTGAAGAGACTACTTGGTATGGTTAACTACATGTACCTTCAGAAATTTGCTCCTAATCTCTCAGAAACCACTGCCCCAATGAGAGAGCTCCTCAAAGAAGAAAACCAGTTCCTGTGGGATGAGGAAGTTCAAGGTCGAAGTTTTAAACAGGTCAAGCAACTGATCGTAGAGTCTCCAGTACTTAAGTACTTTGATCCCAAAGCAGACACTGAACTCAAATATGATGCATCTGACAAAGGTCTTGGTGGGTGCCTCATGCAGGATGGCCAGCCAGTGGGCTATGCTTCAAGAGCGATGACATCTGCAGAAATCAACTATGCACAGATCGAAAAAGAACTTTTTGCCATTGTCTTTGGACTTAACGGTTCGAACAACACGAGAGGAGATGTAGagaaggatacagagagtataAACATGGTCCAGTACCTCCCAGTGTCCGAGACGACACAGAATATCATTTGCACTGCTACTGAATCAGACCCAGTCATGAAAGAACTCAAGACTACCATAAGAGAAGCTGTAGAAGTTATCAGGAAGCTTAAGTTGAAAGCACATCTAGCCAGGCATGGTATACTAGATCAAGTCATATCAGACAATGGACAGCCATTTGCATCTGATAGCTTTCAAGAGTTTTCCAGCACCTATGGTTTTGAACATGTGACCAGTTCCCCCCTGTACGCTCAGTCAAATGGAAAAGTGGAAAATGCTGTTAAGACAGCCGAATCACTCCTAGAGAAGGCAACTAAATCCCAGCGGGACCCATATCCGTCATTGTTAGATTGGAGGAACACTCCAACAGAAGGCCTTAACTCTCTCAGCAGCTCAGCAGCTACAGTATTTGGTCGACGAACGAAAACTCTCCTTCCCACCTCTAACCATCTACTGAAGCTCAAGATTCCAAAGGAAGTCCAGGACAAGTTGACCCTCAAGAGGGCAAAGCAGGCCATCTATTATGACAGAGGCACTAAAGAACTAGAAGAGTTTTTACCTGGGGACTTCGAATACAGCCGCAACAGTCCAAACTACGAAAGAAAAAGGACTGGACTCTTGCTAGAGTGGAAGGAAAAGTCAACATCAGATCTTACCAAGTCCGAACTGAAGATGGACGGGTATACAGAAGAAACAGGCGTCACCTCAGGCGCACACAAGAAACAACAGATAGCTGTTGTCACAAATGGAGAAGCATATGaagcaaaaagtacaaactACAAGGAGAGTTTATACCGACCACCAACCAGTGAAGAGATTAATGCCCTCAAAGAAACTGAGAACCTTTTTAAGTCTAGTCTTTTTCGTATGCAGGTAACTGAACTTCTATCTGAAGTGCAACCAAATAAAGACAGGAATAAAGCCCTGGATGATGTTTTGCATGAATTGAATACTCTACTGCTGTCTTTACCTGACGGGAAAAAGGAACAACAGGTGGCAGACCACTCATGCCTCCCAAGAGGAATCAAATTTCCTCTCCCCTCCACCCCCTCTCCTGTGAAAGGAAAGTTCTGTTTTCGGAAACCAGTAAGTGTCAAAGTTGTTGGGAGTTATCTTCTTGGCACAGTAACAAAACCACACTTGAATGTGGATATTGCTATGGAGATGCCAAAGGAATGTTTTCAACCAAAGGATTATCTGAATCTTAGATATCACCACAAACGAGCTCTGTACCTGTGTATCATTGCTGCACATTTAACAAAGAGTTCATTGTTTGAAAGTGTTCAATTTACACACATGAATGGTGAAGTATTGAGACCAATCCTTCTGCTCAAACCTAAAGGTAAAGCTGGGAAACGGTTTGTTATCAAATTGCATCCTTGTTTATCAGTGGGTACATTCAAACCTCAGAGGTTTTCTCCAAAAAAGAATAATGTCAGACAGAATTGGTTCAATGGTGAGGAGGGCGTGGCAGAAGATGGGTCTGACACAGGAATACCAACACCTCATTACAATGCCTCAGTGTTGTCGGACATGTTCTTGGAGAAGCACCTTCACCATTTGTACAAGTGCATCACTGATTTCCCAGGAATGAAGGACGCAGTGGCTCTAATTAAAGTTTGGCTGCATCAGCGTGAACTTGATCAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03813 all species →	Nrap	Nrap protein domain 1	Domain	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005554 all species →	Family	NOL6/Upt22	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR035082 all species →	Domain	Nrap protein domain 1	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17972 all species →	NUCLEOLAR RNA-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0006409 all species →	Biological Process	tRNA export from nucleus	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0032545 all species →	Cellular Component	CURI complex	Interproscan
GO:0034456 all species →	Cellular Component	UTP-C complex	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_21116.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.