Gene detail

Detailed information of evm.model.contig_21538.5 in Platygyra sinensis

Genomic Location: contig_21538:55317...76915
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_21538.5

ATGGTCTCCTCTCCAGGACTTGTGATCTATGCTGAGGTACTCCTCCTTGTGCAGTATGTCTATGGCCTTCAGCTTACTGATGATGAATTACCACTACAAGACCCTACAGGAACCTTTGACTATTCTGAGCTGGGATTGAAGAAATGGCAATTTCCCTGTTTACACTTGGGTGCACAGACCCTCTTCACCTGGGTGTTCTGGGTGACTTTACGACAGCACATCAGAGAGAAGAAAATGAAGAAAAGGGAAAGGGAAAATGAAGACTCTCTTCCTCTGAGAAATCTGGCTCATCCATTTTTAAAGGCACTTAGGAAGATGTCTGTGGGCTCAGAGGATGCTGATACACTGGATCCCAAAGCATCTGATGACGCTAAGGCACTCATGATGTGGGTCAAATCAGTTCTCGCAAAGTACTGGATCCTACTGTGTTGTGGTGCATTCTTATTGGTCGGTTTACAGAACGAGGTGTCGGTTTACCAGATAGGATACATGGCTATATTTCTATTCATTCTCATTTGTTATCAGATCTCTATTGCCACATGGAGGCTAATTCTACGTCCTCTGTGGTGGGTGATGGTCATATACTCCATCTGTATCTTGTTGTTGATCTACACATATCAGTTTGATAACATGCCTGTCTACTGGCACAATGCTACCGGGCTGTCAGACCAATGGTTGTACAACCTTGGACTTCGCCAACACACAAAAGCCAGTCTTCTGTTAGAACTTCTCACACCCACTGCCTTTTCAATCATTATTGTCATACAGCTACATTTCTTCCATCGTCCATTTCTGGCCATGATTGATTTGAGAGTGAGATCTAACGCGACAGCCCACCAATCAGCAGCGAGAGGTGCTGTAGAACCACATACCACTGCCTCCACCTCACAACAAGATGGCGCCGGACATTCAGAGCCTACTCGGGAGTCCCGGCAGGGTACCCAGAAGTCTTATGTAGTGGTGGCGCTCATCAAGATTGCAAACTTTTACAATGATTTAACTGTTTTCCTTTGGAGAATTGGAGAGCTGCACATGTTGAAACTGGTCAATTTGACACTGATTATTGTGGTGGTTTATCAGGTATGTGCTATTAACGCAGTTATCATCATTCTACTTGGTATCTCCATGCCGTCTCGTGTTCTTCAGAGAGCACTGTCCTACTGTTTCTTAATCTGGAGTTCTCTTGTGATTCTGAGTAAAATGATTTATCAACTGAGGTTCGTGCAGGCTGACTTATTCCAACACAACTGTACGGACCAGACTTTACCTCGACCATCTTCATTCAATCACTTCATCAACAATGCACTGTGGGTCGGTTTTTACAAGACAGATAACATCTCCGAGGACATCAAGGGTTACCTTTTAATTGTCATAGTCATTGTGTTACACGCCGTCATCAAGCATCACCAGAAACTTTACCGTTGGAGGAAAAATCTAAAAGAACCAGATCCTGGAATCTTGTTTCCTGGAATAACAAGACCTGATGCTGATGACGACTTCATTAACTGTGTCAAATATTTGTGTAATAAATTTTTCTTCCACTTTGGTTGGGAGGTTTGTCTAGTTATGATAGTAATAAACATGGCCGTCCGTTGTGATATCACGTCTGTTGTGTACGCCATTTGGCTTGGGGCCTTTTTAGTGCTGGGCCGACAGAACTCGTCCATCGTGTGGCCCGTGTATGTGGGCTTCTTAGCCGTGCTCCTTCCTCTTCAGTATCTCTTGGTGCTTGGATGGCCTCCCGCACTTTGCCTGGCGTATCCGTGGACTAATACGTTGAATTCCAATCTCGTTCACTGGTTGTATCTCACAGATGTCAAACTTCCCCCTGACTCGAAGCTTCTTTTAAGTGACTTCTTCCAATTGCTATTCGCCTGTTGCCAAGAGAATGTATTTTCCATCGAGCGATTCCGACGATCGAGTGAGCAAACCGCGTCCAATGCATCTATCAGCAGAAGAGGAAGCCGCGGTAAAACGACAACGCCTGACTTCATGTGGAATATTACTTGGCTGGACTTCTTCAAGGTGGTTGTATTTCAACACATGTACTGGGTCACTCTAGCCGTTGTTTACATTACTGTTCAGAGCACTATCAGTATCTTCAACTTTGGTTTTATATTGTGGTGTTTCTTCTTCTTGTGGCATGGCCAAGCACTCTACCTCCAGCCAAGAACGAGGCTCTTTAGATTGTGGAAAATCTTCATAGGATATAATTATTTCACTCTTCTTGCTAAAGTTTGTTTACAGGGACCAGTCGCAGGGACTAGTCCCATCGTGTGTGCCGACCTTAATGGAGAAAAGATACTTGCCGATCTCGTGTCTTGTGTGTATGTGGAGTACGTTAAAAACCACACAGGTTGTTGGGCGTTACAGCTATTAAGCTTGTTCTGTTTAAGACAACGTGGATACAAGAACAAGACACAAGCCGTCATTGGTGACTGTGTGGCTCCAGATGACACGGGACTCGCCATGGACTGCGCATGCTTCACTTTCCTTGTCATGCAGTATCGTGTGTTCACATCAGATTATTTTAAGCACGTGGTGCGAGATCACAAAGAGCAGGCCGATATGGCAAGCAGGGGAGCTGAACTAGTCGATGAACATGTTCGTGCCCAGTTGGATGCAGTGAGACTGGAAGACAAAGGGAAAATGGATCGCATCAAAAAATCACTAAGCAAACTGAAAGAGAAACTTGCCAAGCTGCACCCAGCCGGAGAGCAATACGAGCCTCAGTCACACTATGAAGCAATCTACTCTGGAGATTACAAGTGGTTTGAAACTGAATCAGAAGAAGAGCTAGAGAGTGAATCACCCACTGGAAGCCCATCACGTGACAGGAGTCACAGTCCTAATGAACCCGAACGAGACCGAGCTGAAACCAAAGAGACTGAGGACAAAGACATACCAACAAAAGCCACAGGAGACCCAGCCTCATCCGGGGCAAGGAAGACTTCGAGCAGTTCAATCGAAGGCGAAGACGACTTCCTGGCTGTTGTCGCCCCGGAGATGCCCGAAGATGTCGTCGGGCAACCCGACGGATTTGTTACCAAGATAAAGCGTTGGTGTAGCTGGCTGTATTACTACATTGCCATATCTGTAGACAAGGTCATTGAAGTGCTTAATGACATTTCTAAAGACTACCGAGAGATTGCTGACCAGCTCAAGAGAGAACGCAAGGAGAAGAGGATCGAGAAACTTCGGCGGGCTAAGTTCGGTTATGCAGTTGCTCGGGCTCGGCTCGGAGAAGCTTCGGACCCCGAAGCGGACACCAAGAGTCTGACGTCACGCATTACCATGGAGGATGATGACGTGTGGTCGACCTCCAACTTGGACCTGGAGGAAGCTGACGGGAGCGCCAGTTGGCGCAAGTCCAACATGCGGATCTCGCGCCTGACTGTGGCATTCGTGTATGCGCTTCTAGCCAACACAGACATTCTGTGCTACATGCTGATGATATTGAACCACATGGTGTACGCTAGTGTTCTGTCGATTCCGCTACCTTTCCTGGTGTTCCTGTGGGGCATGCTGTCCATTCCCAGACCCACCAAGATATTTTGGATCACGGTGATGACGTATACCCAAATTGTGATCGTGGTAAAGTACTTGTTCAAGTTTCAGTTTATCGACATCAACGATTGTAATCGCGAGGAAGGGTTGGATAAGAACAGTCCGATGTGTCCTCCAAGGCTTTTTGGAATTGAACGAGATGGCCACACGTCCGCCTATGATCTTTTGTTGCTACTGGTGCTTTTCTTCCACAGATATTCATTGAAGGTACTGCCAGTTATTTCTTACCTTGTCAATTCCTCTCTGATTCACGGGTACTTTCCAATGGACTGGAAGGAAGCTTTAGTTAAGCCACTTTTGAAGAAACCTGGGCTTGAGGCGCAGTTCAAGAACTTGCGCCCCATTAGTAATTTACAGTTTATCTCTAAACTAGCAGAAAGATCTGCGTATGTGCAGACATATGATCATCTGATTACACATAATCTTATTCCTGAGCTCCAGTCAGCTTACAGGAAAAGGTACAGCACAGAGACGGCGTTGTTGAAAGTCCAAAATGACATTCTCTTAAATATGGATCGCCAGCATGTGACCCTGCTTGTTTTGTTGGATTTGAGTGCTGCATTCGACACGGTCAATCATGAAATTCTCCTTCGTCGGCTGGAAACTACTTTTGGAATTACAGGTACAGCGCTTCAATGGTTCTCTTCATACCTGGGTAACCGTTCACAGCGTGTTGTATTTAGAGATGGAGTTTCTGAGAGCTTTTATTTGGCATGTGGTGTACCTCAGGGCTCCTGCCTTGGACCCCTGCTCTTTACTGTGTACGCCAGTAAGCTATTCGAGGTCATAAAGCACCATCTCCCGTCCGCGCGTGCTTATGCAGACGACACACAACTTTACGTATCTTTCAAGCCAGATTGCAGTGCTAGCGAGGCAGAGTGCTTTTCTGCTATGGAGAAGTGCATTAGGGCCGTATGA

Transcript

evm.model.contig_21538.5

ATGGTCTCCTCTCCAGGACTTGTGATCTATGCTGAGGTACTCCTCCTTGTGCAGTATGTCTATGGCCTTCAGCTTACTGATGATGAATTACCACTACAAGACCCTACAGGAACCTTTGACTATTCTGAGCTGGGATTGAAGAAATGGCAATTTCCCTGTTTACACTTGGGTGCACAGACCCTCTTCACCTGGGTGTTCTGGGTGACTTTACGACAGCACATCAGAgagaagaaaatgaagaaaagggAAAGGGAAAATGAAGACTCTCTTCCTCTGAGAAATCTGGCTCATCCATTTTTAAAGGCACTTAGGAAGATGTCTGTGGGCTCAGAGGATGCTGATACACTGGATCCCAAAGCATCTGATGACGCTAAGGCACTCATGATGTGGGTCAAATCAGTTCTCGCAAAGTACTGGATCCTACTGTGTTGTGGTGCATTCTTATTGGTCGGTTTACAGAACGAGGTGTCGGTTTACCAGATAGGATACATGGCTATATTTCTATTCATTCTCATTTGTTATCAGATCTCTATTGCCACATGGAGGCTAATTCTACGTCCTCTGTGGTGGGTGATGGTCATATACTCCATCTGTATCTTGTTGTTGATCTACACATATCAGTTTGATAACATGCCTGTCTACTGGCACAATGCTACCGGGCTGTCAGACCAATGGTTGTACAACCTTGGACTTCGCCAACACACAAAAGCCAGTCTTCTGTTAGAACTTCTCACACCCACTGCCTTTTCAATCATTATTGTCATACAGCTACATTTCTTCCATCGTCCATTTCTGGCCATGATTGATTTGAGAGTGAGATCTAACGCGACAGCCCACCAATCAGCAGCGAGAGGTGCTGTAGAACCACATACCACTGCCTCCACCTCACAACAAGATGGCGCCGGACATTCAGAGCCTACTCGGGAGTCCCGGCAGGGTACCCAGAAGTCTTATGTAGTGGTGGCGCTCATCAAGATTGCAAACTTTTACAATGATTTAACTGTTTTCCTTTGGAGAATTGGAGAGCTGCACATGTTGAAACTGGTCAATTTGACACTGATTATTGTGGTGGTTTATCAGGTATGTGCTATTAACGCAGTTATCATCATTCTACTTGGTATCTCCATGCCGTCTCGTGTTCTTCAGAGAGCACTGTCCTACTGTTTCTTAATCTGGAGTTCTCTTGTGATTCTGAGTAAAATGATTTATCAACTGAGGTTCGTGCAGGCTGACTTATTCCAACACAACTGTACGGACCAGACTTTACCTCGACCATCTTCATTCAATCACTTCATCAACAATGCACTGTGGGTCGGTTTTTACAAGACAGATAACATCTCCGAGGACATCAAGGGTTACCTTTTAATTGTCATAGTCATTGTGTTACACGCCGTCATCAAGCATCACCAGAAACTTTACCGTTGGAGGAAAAATCTAAAAGAACCAGATCCTGGAATCTTGTTTCCTGGAATAACAAGACCTGATGCTGATGACGACTTCATTAACTGTGTCAAATATTTGTGtaataaatttttcttccacTTTGGTTGGGAGGTTTGTCTAGTTATGATAGTAATAAACATGGCCGTCCGTTGTGATATCACGTCTGTTGTGTACGCCATTTGGCTTGGGGCCTTTTTAGTGCTGGGCCGACAGAACTCGTCCATCGTGTGGCCCGTGTATGTGGGCTTCTTAGCCGTGCTCCTTCCTCTTCAGTATCTCTTGGTGCTTGGATGGCCTCCCGCACTTTGCCTGGCGTATCCGTGGACTAATACGTTGAATTCCAATCTCGTTCACTGGTTGTATCTCACAGATGTCAAACTTCCCCCTGACTCGAAGCTTCTTTTAAGTGACTTCTTCCAATTGCTATTCGCCTGTTGCCAAGAGAATGTATTTTCCATCGAGCGATTCCGACGATCGAGTGAGCAAACCGCGTCCAATGCATCTATCAGCAGAAGAGGAAGCCGCGGTAAAACGACAACGCCTGACTTCATGTGGAATATTACTTGGCTGGACTTCTTCAAGgtgGTTGTATTTCAACACATGTACTGGGTCACTCTAGCCGTTGTTTACATTACTGTTCAGAGCACTATCAGTATCTTCAACTTTGGTTTTATATTGTGGTGTTTCTTCTTCTTGTGGCATGGCCAAGCACTCTACCTCCAGCCAAGAACGAGGCTCTTTAGATTGTGGAAAATCTTCATAGGATATAATTATTTCACTCTTCTTGCTAAAGTTTGTTTACAGggaccagtcgcagggactagtcccatcgtgtgtgccgaccttaatggagaaaagatacttgcCGATCTCGTGTCTTGTGTGTATGTGGAGTACGTTAAAAACCACACAGGTTGTTGGGCGTTACAGCTATTAAGCTTGTTCTGTTTAAGACAACGTGGATACAAGAACAAGACACAAGCCGTCATTGGTGACTGTGTGGCTCCAGATGACACGGGACTCGCCATGGACTGCGCATGCTTCACTTTCCTTGTCATGCAGTATCGTGTGTTCACATCAGATTATTTTAAGCACGTGGTGCGAGATCACAAAGAGCAGGCCGATATGGCAAGCAGGGGAGCTGAACTAGTCGATGAACATGTTCGTGCCCAGTTGGATGCAGTGAGACTGGAAGACAAAGGGAAAATGGATCGCATCAAAAAATCactAAGCAAACTGAAAGAGAAACTTGCCAAGCTGCACCCAGCCGGAGAGCAATACGAGCCTCAGTCACACTATGAAGCAATCTACTCTGGAGATTACAAGTGGTTTGAAACTGAATCAGAAGAAGAGCTAGAGAGTGAATCACCCACTGGAAGCCCATCACGTGACAGGAGTCACAGTCCTAATGAACCCGAACGAGACCGAGCTGAAACCAAAGAGACTGAGGACAAAGACATACCAACAAAAGCCACAGGAGACCCAGCCTCATCCGGGGCAAGGAAGACTTCGAGCAGTTCAATCGAAGGCGAAGACGACTTCCTGGCTGTTGTCGCCCCGGAGATGCCCGAAGATGTCGTCGGGCAACCCGACGGATTTGTTACCAAGATAAAGCGTTGGTGTAGCTGGCTGTATTACTACATTGCCATATCTGTAGACAAGGTCATTGAAGTGCTTAATGACATTTCTAAAGACTACCGAGAGATTGCTGACCAGCTCAAGAGAGAACGCAAGGAGAAGAGGATCGAGAAACTTCGGCGGGCTAAGTTCGGTTATGCAGTTGCTCGGGCTCGGCTCGGAGAAGCTTCGGACCCCGAAGCGGACACCAAGAGTCTGACGTCACGCATTACCATGGAGGATGATGACGTGTGGTCGACCTCCAACTTGGACCTGGAGGAAGCTGACGGGAGCGCCAGTTGGCGCAAGTCCAACATGCGGATCTCGCGCCTGACTGTGGCATTCGTGTATGCGCTTCTAGCCAACACAGACATTCTGTGCTACATGCTGATGATATTGAACCACATGGTGTACGCTAGTGTTCTGTCGATTCCGCTACCTTTCCTGGTGTTCCTGTGGGGCATGCTGTCCATTCCCAGACCCACCAAGATATTTTGGATCACGGTGATGACGTATACCCAAATTGTGATCGTGGTAAAGTACTTGTTCAAGTTTCAGTTTATCGACATCAACGATTGTAATCGCGAGGAAGGGTTGGATAAGAACAGTCCGATGTGTCCTCCAAGGCTTTTTGGAATTGAACGAGATGGCCACACGTCCGCCTATGATCTTTTGTTGCTACTGGTGCTTTTCTTCCACAGATATTCATTGAAGGTACTGCCAGTTATTTCTTACCTTGTCAATTCCTCTCTGATTCACGGGTACTTTCCAATGGACTGGAAGGAAGCTTTAGTTAAGCCACTTTTGAAGAAACCTGGGCTTGAGGCGCAGTTCAAGAACTTGCGCCCCATTAGTAATTTACAGTTTATCTCTAAACTAGCAGAAAGATCTGCGTATGTGCAGACATATGATCATCTGATTACACATAATCTTATTCCTGAGCTCCAGTCAGCTTACAGGAAAAGGTACAGCACAGAGACGGCGTTGTTGAAAGTCCAAAATGACATTCTCTTAAATATGGATCGCCAGCATGTGACCCTGCTTGTTTTGTTGGATTTGAGTGCTGCATTCGACACGGTCAATCATGAAATTCTCCTTCGTCGGCTGGAAACTACTTTTGGAATTACAGGTACAGCGCTTCAATGGTTCTCTTCATACCTGGGTAACCGTTCACAGCGTGTTGTATTTAGAGATGGAGTTTCTGAGAGCTTTTATTTGGCATGTGGTGTACCTCAGGGCTCCTGCCTTGGACCCCTGCTCTTTACTGTGTACGCCAGTAAGCTATTCGAGGTCATAAAGCACCATCTCCCGTCCGCGCGTGCTTATGCAGACGACACACAACTTTACGTATCTTTCAAGCCAGATTGCAGTGCTAGCGAGGCAGAGTGCTTTTCTGCTATGGAGAAGTGCATTAGGGCCGTATGA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002090 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF15917 all species →	PIEZO	Piezo	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR031805 all species →	Domain	Piezo domain	Interproscan
IPR027272 all species →	Family	Piezo family	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13167 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008381 all species →	Molecular Function	mechanosensitive monoatomic ion channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0042391 all species →	Biological Process	regulation of membrane potential	Interproscan
GO:0050982 all species →	Biological Process	detection of mechanical stimulus	Interproscan
GO:0071260 all species →	Biological Process	cellular response to mechanical stimulus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22128	PIEZO1_2, FAM38; piezo-type mechanosensitive ion channel component 1/2	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.