Gene detail

Detailed information of evm.model.contig_22190.1 in Platygyra sinensis

Genomic Location: contig_22190:5...20180
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_22190.1

ATGCAAATCGCCACTGTGACGACAGCGTACAATGCAGTGTCCCCGGAACAGCTGTCTCTGTCGCCAGGTCAGCTGATCTTGGTGAAGAGAAAACACCCAGATGGATGGTGGGAAGGCGAATTACAGGCGCGTGGTAAGAAGCGCCAGAGCGGGTTGTTTCCAGGCAGTCACGTGAAAATCTTGGACAGGAAAACATCACCAGCTTCTCCCGTTACAGATGATGTTTACAGTGTTCCCCCTCCAGTGTCAAGAGCCAAACTGGAGCAGGTGTTGGCGATGTTCCCGTACACTGCACAGAAGGCAGACGAACTCACTTTCTACAAGGGGAGCGTTATAAACGTGGTGAGCAAAGATGGCGAGTGGTGGAAAGGCGAAATGAACGGCCAGACGGGCATGTTTCCGTCCAACTACGTGCAGCCTCTCAGTAACCTACAAATGGGCACAACACAATGGACGGGAGCGTTTGATGCAAAGGTTTTAGCCTCGATGTCGACGACGGAGCGGCAAAGACAGAACGTTATATACGAGTTGATCAACACGGAGCAGACCTATATGGATGACCTCAGCGCGGCATTAGAAGTGTTTTATAATCCTTTGGCGGACTCTGGTATGCTGACTGAACAGGAATTAAGTACAGTGTTTATCAACTGGAAAGAGCTCATTTGGTGCAACATGAGACTACTCAAGGCGTTTCTTATTCGCAAGAAAATGAGCAGCAGCGTGGCTATTACCTCGATTGGTGACATCCTCTGTGAGATGCTGCCCCGTCTCACGCCGTACGTCAGATTCTGTAGCTGTCAGTTGAAAGCTTGTCAGTTGCTACAGAACAAGATTGAAACGAACCCAGACTTTAAACAGCTAGAAAAGAAATGTATCGCGGATCCTCGAGCGAAGGGTCTTCCTTTGAGCAGTTACCTACTAAAACCTCTGCAGAGAATTTGTAAATATCCTCTTCTGATAAGAGAAATTTTAAAGTTTACGCCGGAGAATCACTTTGACCGAATCAATTTAGAAACTGCGCTTGAAAAAGCTGAAGACCTGTGCCAACAGGTCAATGAAGGTGTTCGATCGCAAGAGAATACTGATCGCCTAGAATGGCTTCAAACACATGTGAACCTTGAAAGCATTGGAGAGCGATTGGTTTTTAATTCCACGACAAACTGCCTGGGACCGCGAAAACTCTTACACTCTGGAACCCTTTGGAAGGTTAAGAGTGGAAAGGAGCTCAAAGCTTTTCTGTTCAATGATTTCCTCATGTTAACACGACCGCGCAGCTCCATTACCGGAAATCTGTCAAAGAAGATTGGATTTAATGAACAGGAGGTCATCTATGACATCTACAGAAAGACTGCTGTGTACTTGTTGTCAGGCATCGATTTCACATTTGTTTTGACTCCTTTTCAGCCTATCATCCTCAATGAAGTCTTTGTCAAGAGAAATCATGATGGCAACACCGACGAATACGTCTTCCATTTATCGCACATCGATCAGCTTTACTCCTTTCGAGCAGAGTCGAAATCAGAAAGCAAAGTCTTTCCGGACAAATGGAATTGGAAAACTCAAAGTAACTTGATCGAGGGAGTGGACTTGAAAGCTTCTGATCCAAATGACGAACAGTGGACAAACGTAAACAACAGCGAAAACCCAAATGCCCACAATTGCGTAAAGGACGTTGCTTTGCTGAGCCGAAAACGCGTTACCATTGGAGTCACGAGTGCCTTGTACCGCTCCACAGAGATTAAGGTTAATGTCAATCCAGACACGATCATACCAATGCCAGCGATTCTATGTGTTGTGATGAATTTACAGAGGAAAGTTCCCAGCTGGCCGCTCGGCTGTATGGTGTACGAGAGAACCGTCCCTGGTAAACACCAGATAAGAGTCAATAAGTCCGCAATGGCGAGATTGACAAGCAAGAAATTCATGGTTGTATGCATGGAGCGCTTTTTTCGAACCACCTGTATGACCAGTGAGTTACCGCAGATTCCAACTAGTACCACAAATGGCGTAGGCTGTGATCAGAAGAATTTCGTCCATGGACGCCTCCATATTATAACGTTTTGTTTCGAATAA

Transcript

evm.model.contig_22190.1

atgcaaatcgccaCTGTGACGACAGCGTACAATGCAGTGTCCCCGGAACAGCTGTCTCTGTCGCCAGGTCAGCTGATCTTGGTGAAGAGAAAACACCCAGATGGATGGTGGGAAGGCGAATTACAGgcGCGTGGTAAGAAGCGCCAGAGCGGGTTGTTTCCAGGCAGTCACGTGAAAATCTTGGACAGGAAAACATCACCAGCTTCTCCCGTTACAGATGATGTTTACAGTGTTCCCCCTCCAGTGTCAAGAGCCAAACTGGAGCAGGTGTTGGCGATGTTCCCGTACACTGCACAGAAGGCAGACGAACTCACTTTCTACAAGGGGAGCGTTATAAACGTGGTGAGCAAAGATGGCGAGTGGTGGAAAGGCGAAATGAACGGCCAGACGGGCATGTTTCCGTCCAACTACGTGCAGCCTCTCAGTAACCTACAAATGGGCACAACACAATGGACGGGAGCGTTTGATGCAAAGGTTTTAGCCTCGATGTCGACGACGGAGCGGCAAAGACAGAACGTTATATACGAGTTGATCAACACGGAGCAGACCTATATGGATGACCTCAGCGCGGCATTAGAAGTGTTTTATAATCCTTTGGCGGACTCTGGTATGCTGACTGAACAGGAATTAAGTACAGTGTTTATCAACTGGAAAGAGCTCATTTGGTGCAACATGAGACTACTCAAGGCGTTTCTTATTCGCAAGAAAATGAGCAGCAGCGTGGCTATTACCTCGATTGGTGACATCCTCTGTGAGATGCTGCCCCGTCTCACGCCGTACGTCAGATTCTGTAGCTGTCAGTTGAAAGCTTGTCAGTTGCTACAGAACAAGATTGAAACGAACCCAGACTTTAAACAGCTAgaaaagAAATGTATCGCGGATCCTCGAGCGAAGGGTCTTCCTTTGAGCAGTTACCTACTAAAACCTCTGCAGAGAATTTGTAAATATCCTCTTCTGATAAGAGAAATTTTAAAGTTTACGCCGGAGAATCACTTTGACCGAATCAATTTAGAAACTGCGCTTGAAAAAGCTGAAGACCTGTGCCAACAGGTCAATGAAGGTGTTCGATCGCAAGAGAATACTGATCGCCTAGAATGGCTTCAAACACATGTGAACCTTGAAAGCATTGGAGAGCGATTGGTTTTTAATTCCACGACAAACTGCCTGGGACCGCGAAAACTCTTACACTCTGGAACCCTTTGGaagGTTAAGAGTGGAAAGGAGCTCAAAGCTTTTCTGTTCAATGATTTCCTCATGTTAACACGACCGCGCAGCTCCATTACCGGAAATCTGTCAAAGAAGATTGGATTTAATGAACAGGAGGTCATCTATGACATCTACAGAAAGACTGCTGTGTACTTGTTGTCAGGCATCGATTTCACATTTGTTTTGACTCCTTTTCAGCCTATCATCCTCAATGAAGTCTTTGTCAAGAGAAATCATGATGGCAACAccGACGAATACGTCTTCCATTTATCGCACATCGATCAGCTTTACTCCTTTCGAGCAGAGTCGAAATCAGAAAGCAAAGTCTTTCCGGACAAATGGAATTGGAAAACTCAAAGTAACTTGATCGAGGGAGTGGACTTGAAAGCTTCTGATCCAAATGACGAACAGTGGACAAACGTAAACAACAGCGAAAACCCAAATGCCCACAATTGCGTAAAGGACGTTGCTTTGCTGAGCCGAAAACGCGTTACCATTGGAGTCACGAGTGCCTTGTACCGCTCCACAGAGATTAAGGTTAATGTCAATCCAGACACGATCATACCAATGCCAGCGATTCTATGTGTTGTGATGAATTTACAGAGGAAAGTTCCCAGCTGGCCGCTCGGCTGTATGGTGTACGAGAGAACCGTCCCTGGTAAACACCAGATAAGAGTCAATAAGTCCGCAATGGCGAGATTGACAAGCAAGAAATTCATGGTTGTATGCATGGAGCGCTTTTTTCGAACCACCTGTATGACCAGTGAGTTACCGCAGATTCCAACTAGTACCACAAATGGCGTAGGCTGTGATCAGAAGAATTTCGTCCATGGACGCCTCCATATTATAACGTTTTGTTTCGAATAA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF16652 all species →	PH_13	Pleckstrin homology domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR001331 all species →	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR051480 all species →	Family	Endocytic & GEF Adapter	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46006 all species →	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0035025 all species →	Biological Process	positive regulation of Rho protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_22190.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.