Gene detail

Detailed information of evm.model.contig_22248.4 in Platygyra sinensis

Genomic Location: contig_22248:44624...60337
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_22248.4

ATGGATGACATAATCCAGGGTGAAGAGCCTCAGGGTTTGTTTTCGAAGCGTTCATCGTCGAATATTCTTTCCGATCCGAGAATTTTAGCTCACTTGCGGATCGTGGCCGAGGAGGCGCAAAGTTCCGATAAGGACCACGAACAAGATGAGGAGTCGGAGCTACAGAACACAAAACGAGAGCTTGGACTCAAGATAGCGGGTTACAATAAAGGAAACCAACACGGGGCATTCCGACTGATATTGAAAGAGGATTTAGGCTTCGAAGGAGCTTTACGATTTTACTTTGAAGACGGCAAAGAAGAACTGACAAAGGCTCTGCGCCTTACAAACAAAACACTGGTCTCTGAGCTGTTGCCAACGCTGATAGAAAAGTTCAAGCCTGATTTGGTGAACTCTGCGGTCGAGAAAAAAGCTAAACTATACGAAGTTTATGAAGAAGATGAAATCTGTTTAGACCCTTCAGATGCCCCACTTGAAATTGCACTAAATGCCAAAAAGCTTCCAAGATTTGTCTTGCGTCTGGATTACAAAAATTCTCCGCAGTCCTCTGTGATATCAAATGGTGAAAGTGTCATAAACAAGACATCATTGCCCAATGGAACAGCCTTGAGCAATCGTGCTGCAACCCCCAGCATTCCGTCTCCAAGTCTGTCAAAGGCTAGCACACGCACTGCTGGTAGTGATAACAGCTCTGGCAGCTCCGCAGGACAGTCAAACTTAAGGAATGAGAGCCCAGTGTCTGGGAAAAAGCTATTTACAAAGTCGAAAACCCCACCACCAGTTCGCAGTGCGATAAATGACAAAATGCCATCGTCATCGAAAAATGACAAGAAGAGAAACTTTTTTAGTTCACCACGAAGTGCTTTTGGAATGTTTTTTGATGGAGCTGGAAATCAGTCTGATCAGAGTTCCCATGCTGCAAATAAAATGGCTCGGGCAAAGCACAAAAGGAAAGGATCTTTGGGCCGTCTGAAAATAAAGAAGAAAACTGAAGAAAAGAGACTCACTGAATTGTCCACAGAGCAGATGGCTCCTGGCATTCTTAAAGTCTTTGGTGATCATGTTTCACCAGGTTCAAACTACAAAAGTGTTCGAGCTACTGAGATGACAACTGCAGATGAAATTGTTCAGCAGGCTCTTGAAAGGTATTCACTTTCTAGGGAAAAGGCATCAGATTATGTGCTTTGTGATGTGATTGGGTACTTTACTAAAAGGACAGGGAGTGTTAGTAATGCAGAGGAAGATGCTGATAAGTGGATAACAGAGTATGCCAGAGTGATCAGTGACAAAGAGAAACCTCTTGTGCTTCAACAGCTGTGGAAGCCAATCAAAGGGTTTTCTCGTAGGTTTGAGCTACGGAGACGTATTGAAACACAGGATTCATCATTCTTCAAAGCTAGAGGGAGTGTTGCAATCATGAGAGCTGCATCAGTACGTGAAGCTCACGTACCTCAAAGCATCAAAGAAACCCGACGAGATACAGGACAAAGTGAAGTGTCTCATCTGTCGTCAGGTGAAGATCATTTGTCAAGTATCGGCGTGGATGAGGGAGGAAGCTCTGGACGAGCATCAATGATTGCATCACCTTTTATTGCCCCTACAGACACACCCTATCTTCTTCTTCTCAAAGGTTGTAGTAATGCTGATGACTTCTTATACCACAGACTAGATGAACAATTAGCTGTGGTTGGTCGCCCTGTGCATCACATTGAAACAGACCAATCTCCTGATATTGTTCTATTAGCTCCAGACATTTTACCTCAACACTGCATTTTAAGTAAAAGAGTTGAATCATCTGCTCCAGACTTTGAACAAGACTATGACGTGAATTTTGCAGTCTATTTAGAACCTTCTAGAAGTGCAGATGTTTGCATAAATGGAGGAGCTGTCTCGTCACCCACTAAACTCACTCCAGGGGATTTAGTTTCATTTGGGAAGCATTACTATTTCTTGTTTAAAGATCCCTCTCAGGTGGAAGATAGTTCCATGAAGCTAACTTGGGTTAATCATTTGAAACAATTTAACAAGTTGCAGTTGTCACAAAGACTTCAGAGCTTACCTGACGGCACAACAAGCAGCAGTTCAACAACTGTTGTAGGCATTGAAGATGAGCCAAGCAATAGTTTGCAGTTGTCGTACTTGCCACAAGATGAGGATGATTTGCTGGATATGATAATGGACATTGTGGATTTAGCAGGAGATGGCTACAAGTTGTCTCCAGCATATTTGTTAATTATGTGTATTGAACATTCTGCACGATATCACACAGAACTGCAAACAAGGCAGCTTCTCATCAAGATGTCAAATGCAATCCAGACTGTAGCATCGGAGAAGACAACAGAAATGTCCAAGACAATAGAGAGAACAACAGTGCCAGAAAAGGCATTAGAGGAGCTTCTTCCTCAGCTGCGACCAGTTGTTTTCTGGATGGCTAATTGTCTGGAAATGCTTCCCTATCTTCAAGCTAACATGTCTCAGTTCATCAAAGATCCTTCTCAAGTTACTGAGTTTAGCGATGAAGCTTTACTTAATGCTGATGAGGAACTTCTCATGTTTCTTGAAGAAGTTATCATTTACACCTTTCAACAGACTGTGTACCACCTTACTAAGGTGTTGTACATCGCACTTCCGGCCATTTTAGACACGAATCCATTCCAAGATACCGACGAAGACAGCGACAAAAAACCACAAGAAGTAGAAACCGTCATCAGCATTTTCCAAACCACTTACGAAGTTGTTAAAGCGTATTCAGTTCACGTAGACATAATTCACCAACTCTTTGCATATTTATTTTTCTTCACAAACGCTTCCCTGTTCAACACGTTGATGGAGCGGGGAGCTGGGGGCAAGTTCTACCGCTGGGCTAAAGGAGCGCAGATACGGGGTAACTTGGATTTGTTGGAGAGCTGGGCTGCGCAGGTTCAACTTCAGGACGAGGCTAATGACTATTTGAACAGACTGTCTACTGCAGCTGATTTGTTGGCCACGCCCAAAGTGCAGCTTTTGCAGGCTGACTGGATGACAATCAGAAGAGACTTCCCGGCACTCAACCCAGCTCAAGTGCAGCAAATTCTGGGTGAATACCAGCTCGGCCCTGGCAAGTCGCGACCAAGAGGCTGGTTTCCCCCTCCGGAAGAGGTGGAGCCCGCGCTTCGCACAGCGGACATCTTACTAAACTTCTCGGAACACCCCCCGTTAAAACTACCGACTGAAGGATTTGTACTGGACTTTGAGACGGGACCTTCGGATCCGTCTTTCTACCACTATCTGGATGAGGTTAGACGGGCGATGAATTCAGGTCAAAGTACTACAGGATCAGACACGACAAGGGAAAATGGAATAAACAGAATTCAGCAACCGGAACCGGAAGTGAGCCATTCGAATGGAATTCGTGTGTCGTCGTTATCACAGAGTCAAGATCACGTGCCTGATCTGGTAGTCTCCCTAGCCTCCCCTAACTGCAACACTCCTGGTGGAAAGGACAACAACGATTTCACATTCGAGACTGTCGTGTCAAATTCTCCTCCGTCAAGAAGAGAAAACGAGACCATTAGATCTTATGACACAAGGCAACCTGTCCCACTTGAAAGAAGAGAAACTCCCCCCAGAAAACAAGACACACCATCCAGCAAACCGAAATTCTCAGAACCGTCAGCGAAAACCGAAGTTGTCCAAGGCGGAAAGCGGCCCCTTGGAAGACTGGTGTCCGGACAAAAGCCTGCTGCCACCACTGGCTATCTGTTCAGTCGTTCGGAGGGTCGTGATTCCGTGGGGTCGTCTACTGATGACTCTTCAGTGGTTTCTGCTAGAGCACTGAAGAAAGAAGAACCTAGAACCTCAGAGCCATCAACTAGCGATGCTAAAGATGAAAACCAAAACGTGATGAATGGGAGAGCAGCTTCGCCTTACACGAATGACAACTCTAAGTGGGTTGAAGTGACAGACGCCGTGACACGCATTGCCGTGAACAACGTGGACGGTTTGTCCGTGCTTCCAGTGGACGACGCGGAAACGAATGAAGAGCTGGCTCTTCAGATAGCCATGGATCCGACAATTGAGACCTCAAAGGAGTTCGACGAGAAGAGGGCGCTTCAGAAAGCGAAACTCTTGAGTCGCTTGAGAAACGAGTCCGATGTTGACATTGCAGATGTACCAGCGAGTGCGAATGGCTTCCCAACCAAGATGGAAGGAATGAGGGAGACGGATGACCGACAAGATGACGTGTTTATTGTCGAGCTGGAGAAGGGAGACGACGGGATTGGCCTGGGACTGATTGATGGGCTGTACACACCATTACGGTCGCCAGGGATTTATGTGCGGACGCTTGTAGCCGGTGGCCCAGCCATGAAGGATGGTCGCCTCCGTCTCGGTGATCGTATCCTCGCGGTGAATGGAACTAGCCTTGTTGGGGCAGATTATCAAAGTGCCATGCAACAGATCCGACAATCAGGACAACAGTTATCCTTTCTGGTGGCGAAGTCTGATATTCATGTGGCTATGAAGATCACTGCTTCCAGCTGCTAA

Transcript

evm.model.contig_22248.4

ATGGATGACATAATCCAGGGTGAAGAGCCTCAGGGTTTGTTTTCGAAGCGTTCATCGTCGAATATTCTTTCCGATCCGAGAATTTTAGCTCACTTGCGGATCGTGGCCGAGGAGGCGCAAAGTTCCGATAAGGACCACGAACAAGATGAGGAGTCGGAGCTACAGAACACAAAACGAGAGCTTGGACTCAAGATAGCGGGTTACAATAAAGGAAACCAACACGGGGCATTCCGACTGATATTGAAAGAGGATTTAGGCTTCGAAGGAGCTTTACGATTTTACTTTGAAGACGGCAAAGAAGAACTGACAAAGGCTCTGCGCCTTACAAACAAAACACTGGTCTCTGAGCTGTTGCCAACGCTGATAGAAAAGTTCAAGCCTGATTTGGTGAACTCTGCGGTCGAGAAAAAAGCTAAACTATACGAAGTTTATGAAGAAGATGAAATCTGTTTAGACCCTTCAGATGCCCCACTTGAAATTGCACTAAATGCCAAAAAGCTTCCAAGATTTGTCTTGCGTCTGGATTACAAAAATTCTCCGCAGTCCTCTGTGATATCAAATGGTGAAAGTGTCATAAACAAGACATCATTGCCCAATGGAACAGCCTTGAGCAATCGTGCTGCAACCCCCAGCATTCCGTCTCCAAGTCTGTCAAAGGCTAGCACACGCACTGCTGGTAGTGATAACAGCTCTGGCAGCTCCGCAGGACAGTCAAACTTAAGGAATGAGAGCCCAGTGTCTGGGAAAAAGCTATTTACAAAGTCGAAAACCCCACCACCAGTTCGCAGTGCGATAAATGACAAAATGCCATCGTCATCGAAAAATGACAAGAAGAGAAACTTTTTTAGTTCACCACGAAGTGCTTTTGGAATGTTTTTTGATGGAGCTGGAAATCAGTCTGATCAGAGTTCCCATGCTGCAAATAAAATGGCTCGGGCAAAGCACAAAAGGAAAGGATCTTTGGGCCGTCtgaaaataaagaagaaaacTGAAGAAAAGAGACTCACTGAATTGTCCACAGAGCAGATGGCtcctggcattcttaaagtcttTGGTGATCATGTTTCACCAGGTTCAAACTACAAAAGTGTTCGAGCTACTGAGATGACAACTGCAGATGAAATTGTTCAGCAGGCTCTTGAAAGGTATTCACTTTCTAGGGAAAAGGCATCAGATTATGTGCTTTGTGATGTGATTGGGTACTTTACTAAAAGGACAGGGAGTGTTAGTAATGCAGAGGAAGATGCTGATAAGTGGATAACAGAGTATGCCAGAGTGATCAGTGACAAAGAGAAACCTCTTGTGCTTCAACAGCTGTGGAAGCCAATCAAAGGGTTTTCTCGTAGGTTTGAGCTACGGAGACGTATTGAAACACAGGATTCATCATTCTTCAAAGCTAGAGGGAGTGTTGCAATCATGAGAGCTGCATCAGTACGTGAAGCTCACGTACCTCAAAGCATCAAAGAAACCCGACGAGATACAGGACAAAGTGAAGTGTCTCATCTGTCGTCAGGTGAAGATCATTTGTCAAGTATCGGCGTGGATGAGGGAGGAAGCTCTGGACGAGCATCAATGATTGCATCACCTTTTATTGCCCCTACAGACACACCCTATCTTCTTCTTCTCAAAGGTTGTAGTAATGCTGATGACTTCTTATACCACAGACTAGATGAACAATTAGCTGTGGTTGGTCGCCCTGTGCATCACATTGAAACAGACCAATCTCCTGATATTGTTCTATTAGCTCCAGACATTTTACCTCAACACTGCATTTTAAGTAAAAGAGTTGAATCATCTGCTCCAGACTTTGAACAAGACTATGACGTGAATTTTGCAGTCTATTTAGAACCTTCTAGAAGTGCAGATGTTTGCATAAATGGAGGAGCTGTCTCGTCACCCACTAAACTCACTCCAGGGGATTTAGTTTCATTTGGGAAGCATTACTATTTCTTGTTTAAAGATCCCTCTCAGGTGGAAGATAGTTCCATGAAGCTAACTTGGGTTAATCATTTGAAACAATTTAACAAGTTGCAGTTGTCACAAAGACTTCAGAGCTTACCTGACGGCACAACAAGCAGCAGTTCAACAACTGTTGTAGGCATTGAAGATGAGCCAAGCAATAGTTTGCAGTTGTCGTACTTGCCACAAGATGAGGATGATTTGCTGGATATGATAATGGACATTGTGGATTTAGCAGGAGATGGCTACAAGTTGTCTCCAGCATATTTGTTAATTATGTGTATTGAACATTCTGCACGATATCACACAGAACTGCAAACAAGGCAGCTTCTCATCAAGATGTCAAATGCAATCCAGACTGTAGCATCGGAGAAGACAACAGAAATGTCCAAGACAATAGAGAGAACAACAGTGCCAGAAAAGGCATTAGAGGAGCTTCTTCCTCAGCTGCGACCAGTTGTTTTCTGGATGGCTAATTGTCTGGAAATGCTTCCCTATCTTCAAGCTAACATGTCTCAGTTCATCAAAGATCCTTCTCAAGTTACTGAGTTTAGCGATGAAGCTTTACTTAATGCTGATGAGGAACTTCTCATGTTTCTTGAAGAAGTTATCATTTACACCTTTCAACAGACTGTGTACCACCTTACTAAGGTGTTGTACATCGCACTTCCGGCCATTTTAGACACGAATCCATTCCAAGATACCGACGAAGACAGCGACAAAAAACCACAAGAAGTAGAAACCGTCATCAGCATTTTCCAAACCACTTACGAAGTTGTTAAAGCGTATTCAGTTCACGTAGACATAATTCACCAACTCTTTgcatatttatttttcttcacaaacgCTTCCCTGTTCAACACGTTGATGGAGCGGGGAGCTGGGGGCAAGTTCTACCGCTGGGCTAAAGGAGCGCAGATACGGGGTAACTTGGATTTGTTGGAGAGCTGGGCTGCGCAGGTTCAACTTCAGGACGAGGCTAATGACTATTTGAACAGACTGTCTACTGCAGCTGATTTGTTGGCCACGCCCAAAGTGCAGCTTTTGCAGGCTGACTGGATGACAATCAGAAGAGACTTCCCGGCACTCAACCCAGCTCAAGTGCAGCAAATTCTGGGTGAATACCAGCTCGGCCCTGGCAAGTCGCGACCAAGAGGCTGGTTTCCCCCTCCGGAAGAGGTGGAGCCCGCGCTTCGCACAGCGGACATCTTACTAAACTTCTCGGAACACCCCCCGTTAAAACTACCGACTGAAGGATTTGTACTGGACTTTGAGACGGGACCTTCGGATCCGTCTTTCTACCACTATCTGGATGAGGTTAGACGGGCGATGAATTCAGGTCAAAGTACTACAGGATCAGACACGACAAGGGAAAATGGAATAAACAGAATTCAGCAACCGGAACCGGAAGTGAGCCATTCGAATGGAATTCGTGTGTCGTCGTTATCACAGAGTCAAGATCACGTGCCTGATCTGGTAGTCTCCCTAGCCTCCCCTAACTGCAACACTCCTGGTGGAAAGGACAACAACGATTTCACATTCGAGACTGTCGTGTCAAATTCTCCTCCGTCAAGAAGAGAAAACGAGACCATTAGATCTTATGACACAAGGCAACCTGTCCCACTTGAAAGAAGAGAAACTCCCCCCAGAAAACAAGACACACCATCCAGCAAACCGAAATTCTCAGAACCGTCAGCGAAAACCGAAGTTGTCCAAGGCGGAAAGCGGCCCCTTGGAAGACTGGTGTCCGGACAAAAGCCTGCTGCCACCACTGGCTATCTGTTCAGTCGTTCGGAGGGTCGTGATTCCGTGGGGTCGTCTACTGATGACTCTTCAGTGGTTTCTGCTAGAGCACTGAAGAAAGAAGAACCTAGAACCTCAGAGCCATCAACTAGCGATGCTAAAGATGAAAACCAAAACGTGATGAATGGGAGAGCAGCTTCGCCTTACACGAATGACAACTCTAAGTGGGTTGAAGTGACAGACGCCGTGACACGCATTGCCGTGAACAACGTGGACGGTTTGTCCGTGCTTCCAGTGGACGACGCGGAAACGAATGAAGAGCTGGCTCTTCAGATAGCCATGGATCCGACAATTGAGACCTCAAAGGAGTTCGACGAGAAGAGGGCGCTTCAGAAAGCGAAACTCTTGAGTCGCTTGAGAAACGAGTCCGATGTTGACATTGCAGATGTACCAGCGAGTGCGAATGGCTTCCCAACCAAGATGGAAGGAATGAGGGAGACGGATGACCGACAAGATGACGTGTTTATTGTCGAGCTGGAGAAGGGAGACGACGGGATTGGCCTGGGACTGATTGATGGGCTGtaCACACCATTACGGTCGCCAGGGATTTATGTGCGGACGCTTGTAGCCGGTGGCCCAGCCATGAAGGATGGTCGCCTCCGTCTCGGTGATCGTATCCTCGCGGTGAATGGAACTAGCCTTGTTGGGGCAGATTATCAAAGtGCCATGCAACAGATCCGACAATCAGGACAACAGTTATCCTTTCTGGTGGCGAAGTCTGATATTCATGTGGCTATGAAGATCACTGCTTCCAGCTGCTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF01843 all species →	DIL	DIL domain	Repeat	Interproscan
PF00498 all species →	FHA	FHA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR002710 all species →	Domain	Dilute domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR052072 all species →	Family	Vascular development regulator domain-containing protein	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16027 all species →	DILUTE DOMAIN-CONTAINING PROTEIN YPR089W	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0051020 all species →	Molecular Function	GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26418	RADIL; Ras-associating and dilute domain-containing protein	-	Adherens junction	ko04520	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.