Gene detail

Detailed information of evm.model.contig_22658.6 in Platygyra sinensis

Genomic Location: contig_22658:54785...80093
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_22658.6

ATGACAAAATCTGGAAACAAGAAAAGGAAGAAATTAAGTAGCTCGTCAAGTACTGAAGCCGCTTCTTCCGCCGAAGGCAAAGGAGACGAAGCATTTGAATCGGGAAAGTCGGCAGCAATGGCGACCAACGAAGGCGTCAATGAAACCCCTTCTCTGGTCGACGTATGGAACGTGCTTACGGAAATTAAAGCTAATACCGTGAAGTGGGTAGTTGACGTGGAATTGTTAAAGGCAAATTACAACGAGCTAAAAGGCAGTCTATATTCTACAAAGAGCCAGGTGGACGCCCTAGTCACAGAAAATATTGCTGTTAAATCCAAGTTGAAGCTCCTCGAAGAACAAGTATTAACATCAAAGAAGGAGTTAGAGGAACTTAAACAAAGACTCTACGATGTTGAAGGTAGCCACGATGACTTGGAACAATATACACGTAAATTTAATTTAGTGATACACGGAATTCCAGAACGCGAAGAAGAAGATAATGTTCAGAATGTTATTAGTTTAGGAAATATTCTGAAGGTCAACTTAACACGTAGTGACATTGATATTGTTCACAGATTGCATACAAAAAACAAAACCAAAACACGACCGATTATCGTCCGTTTCAGTAACTACAATGCAAAAAGCCAACTTTATAAAGCCAGGATAAATCTACGAAATGCAACTCTACATGACCTTGGAGCGGAGAAGATCTTCATCAATGAAAACTTAACTGCATGGAGAGCGAGGCTATTCAGAGAGGCAAGGAACGTTGTGAAGAAATTTCACAACGTGTCTACTGTGAAATTCTTAACGCTTAACGTTAGAGGTTTGAGGAATCAAGAAAAAAGAAGATCGATATTCTCATATTTAAAAAGACAAAAAGCAAATATTTACCTCCTTCAAGAAACTTTCTCTAATCCTAAAGATGAGCGGATCTGGTCGGCTGAGTGGGGTGGCCAAATTTTCTATTCTCATGGTTCAGAGCATTCAAAAGGTGTTTGCGTGCTCATAAAACCGAATTCTCCAATTCAAGTAGAGATAGTAGAGCTTGATACGAATGGAAGATTTATAATACTACGTCTCAAGACGCCTGGTGAGACCAACTTTAACATTGTTAATATTTATGCTCCCACAGATTATCGTGAACAAATTGATTTCATTGAATCTCTTACTAAAAAGATAATATCCTTGACTGATATGTCCAACTTAATAATTGCAGGTGACTGGAATACAACTTTTAACTCAATAGATAAGCAAGGAGGATTAGCCTGGAAAGAAACTAAGTACAGGAATTCGTTAATTTGTTTCATGGAAGCGGCCAATCTAGTTGATATATACCGCAAAATTCACCCAAAAATTAAAACCTTCACATATGAATCAAAAACCTTGAAACTAAAATCACGCATTGATTTTTTCTTAATAAGTGGCAAATTTCAGCATGACGTTACAAAAGTGGAAACGCGAGCATCAATCGCACCTGATCATAAAGCAGTCGTTTTGAGCATTAATCTCAATGAGGAATTTAAACGCGGCCCTGGCTTATGGAAATTTAATAACACTCTTCTTCAAGATGAGTGGTATTTACAGTTAATTAAAGACTATTATCCATATCAACAGGATCTACTGGAATATGAAATACTAAAGAAAGAATTACAAGGTATATACGAAGCTAATGGCAAGGGAGCAATATTCAGATCGAAGGTTAGATGGATTGAAAAAGGAGAAAAGCCTACAAAAAATTTCTTTAACCTCGAGAAAAGAAACTATGACAAAAAGATTATATCACAACTGTATAATGGCGAGGAGGAGCTCTTATCAGACTTAAAAAAAATAGATAAAGAAATAGAAAATCACTTTAGTCAATTTTACAAAACGAACTTTGATCCTGGAGAAGAAAAGGAGATGCCAAGGAAATTCCAAAGCTTTGTTGAGAATTTGAACCTCACACACCTTGAAGAACATGAAAACCTTGAATTAGAAGCTGAAATAAACATTGAAGAGGTTCAAAGTGCGGTGAATAGTTTCCAAAATAACAAAACTCCCGGCGATGATGGCTTCACAAAAGAATTCTATGAAACCTTCTTTGACCTTATAGGTCCTGCGCTCTTAGATTCATTAAATGCAGGGTTTGAATGTGGAACATTGTCTATATCACAAAGACGAGGAGTTATTTCTTTAATCCCAAAAGACGAAAACAATTTGATGACATTATCTAACTGGCGCCCTATCACTCTGCTCAATGTAGACTACAAGATCCTTTCAAATATCATTGCAAATAGAATTAAACCAGTCTTGCCAAAATTAATCCATCCTGATCAAACAGGGTTTATTAAGGAAAGATTCATCGGACAAAATATCAGACTGTTGAATGAACTAATGGAATATACAGACGAGCAAAAAATACCAGGGATCCTGTTGTTTATTGACTTTGAAAAAGCCTTTGATACAATAGAATGGACTTTTATTCAAAATGTACTGAAATGCTTTAATTTTGGTCCTGTTATTAGAAAATGGATCTCAGTACTCTATAAGGACGTAGAAAGTGCTGTTATTAATGGAGGATACTCAAGTAACTACTTTAAAGTATCAAGAGGAGTTCGGCAAGGATGTTCATTAAGCTCCTTGTTATTCGTGTTAGGTGTAGAGATCTTGGCTCAAAAAATAAGGCAGTGTACGAGCTGTCAAGGAATAAAACTTCCGCAATCGGTAGAAGCCAAAATTAGTCAATTTGCAGATGATACATCGCTCATTTGTAGGGACGTTAACGCGCTCAGAGAATACATGGATGTTTTAAATAAATTTAATGACATTTCCGGCCTTAAATTGAACAAGAAAAAAACTAAAGCAATGTGGATTGGTTCAGCTAAAAATAATAAAACCAAACCTTTAGGCTTTCAACCCTATCAAGAACCGATTAAATCACTAGGGTTCGTAGCAACTGTTTGTACTGACTTCTTGTCAAAAGATATTCAGTGGGGCCGAGTAGGAGAGGACCCTGGGAACGAGGTTGGACTTAAAGGGTCTTTCTCGCACTTTTCCTCTGTGGCCTATATTTGGGGAGCTGGGGATGGTGGACAGTTGGGGACTGGTACCAAAGAATGCAGTCTTCTTCCAATAAAATTTCCTGTTCCTTGTGAAGTTTCCCACATAGGCTGTGGGTATGGCTTCACAATAGCAGGTAAAGCAGACAGTCACAGCCTGTGGACAACTGGTCTGAATTCATTTTCACAGCTGGCAAGACAACTATCATCTAGCAGTGGACAAGGTCCATCCACAGTTGATCTCAGTGTAAATACAAGTCTATCATCCAGGGTTCAGCAAATTTCCTGTGGGAGATCACATTCTGCAGTGCTATTGGACAACGGTGAAGTTTTGACCTGTGGGGGACACTTCAATGGACAGTGTGGAGTTGGAGATGTGGATGGAAGTTTTGTCAAGCAATTTACAAAGATACAAAGTCTTCCAGGGAAGATTAAACAGATAGCATGTGGCCTTGATCACACCCTTCTTCTGTGTCATGATGGCAGAGTGGTGTCCTGTGGTTGGGGTGCAGATGGACAGACTGGGCTAGGTCATTTTAAAGATGAGGCAAGTTTTAAACTTATCGAAGGAGAACTGAAAGACGTTCAAATAAAACAAGTCGCTTCTTCAGCAGATTGCTGTTTGGCTCTGTCAGATGAAGGAGAAGTTTTTTCTTGGGGAAACAACGAATACGGTCAGCTGGCTGTTGAGAGTAATGAAGAACAATTTGCAGTCCCTAAAAGAGCGTCATTATTAAAAGGTCTACCAGAGATCACGCAAGTGGCTGCTGGTGGTTCGTTCTGTGTTGCCCTCACTGTCACTGGAGAACTCTACAGTTGGGGCTATGGTGTTCTGGGACATGGTCGCGAGGTTTCCTTTTTGAAGATGCCGAGAAAAATTGAAGAATTTTCTTCCACTGATGAAACTATTGCACGAGTGTTTTGCGGCCCTGATAACACCGCTGTAGTTACAGATACAGGTGCACTGTATACCTGGGGGAGAGGATCATTTGGAAGACTCGGTCTTGGCTCAAAACAAGATCAGTGGATCCCTAAGAAGGTTGATCTTCCTGGTGATGTGTTGGATGTTAGCTGCGGTGTGGACCATATGGCAGCCGTCCTAAAGTGCAGTTAA

Transcript

evm.model.contig_22658.6

ATGACaaaatctggaaacaagaaaaggaagaaattaagTAGCTCGTCAAGTACTGAAGCCGCTTCTTCCGCCGAAGGCAAAGGAGACGAAGCATTTGAATCGGGAAAGTCGGCAGCAATGGCGACCAACGAAGGCGTCAATGAAACCCCTTCTCTGGTCGACGTATGGAACGTGCTTACGGAAATTAAAGCTAATACCGTGAAGTGGGTAGTTGACGTGGAATTGTTAAAGGCAAATTACAACGAGCTAAAAGGCAGTCTATATTCTACAAAGAGCCAGGTGGACGCCCTAGTCACAGAAAATATTGCTGTTAAATCCAAGTTGAAGCTCCTCGAAGAACAAGTATTAACATCAAAGAAGGAGTTAGAGGAACTTAAACAAAGACTCTACGATGTTGAAGGTAGCCACGATGACTTGGAACAATATACACGTAAATTTAATTTAGTGATACACGGAATTCCAGAACGCGAAGAAGAAGATAATGTTCAGAATGTTATTAGTTTAGGAAATATTCTGAAGGTCAACTTAACACGTAGTGACATTGATATTGTTCACAGATTgcatacaaaaaacaaaaccaaaacacgACCGATTATCGTCCGTTTCAGTAACTACAATGCAAAAAGCCAACTTTATAAAGCCAGGATAAATCTACGAAATGCAACTCTACATGACCTTGGAGCGGAGAAGATCTTCATCAATGAAAACTTAACTGCATGGAGAGCGAGGCTATTCAGAGAGGCAAGGAACGTTGTGAAGAAATTTCACAACGtGTCTACTGTGAAATTCTTAACGCTTAACGTTAGAGGTTTGAGGAATCAAGAAAAAAGAAGATCGATATTCTCatatttaaaaagacaaaaagcaaATATTTACCTCCTTCAAGAAACTTTCTCTAATCCTAAAGATGAGCGGATCTGGTCGGCTGAGTGGGGTGGCCAAATTTTCTATTCTCATGGTTCAGAGCATTCAAAAGGTGTTTGCGTGCTCATAAAACCGAATTCTCCAATTCAAGTAGAGATAGTAGAGCTTGATACGAATGGAAGATTTATAATACTACGTCTCAAGACGCCTGGTGAGACCAACTTTAACATTGTTAATATTTATGCTCCCACAGATTATcgtgaacaaattgatttcattGAATCTCTTACTAAAAAGATAATATCCTTGACTGATATGTCCAACTTAATAATTGCAGGTGACTGGAATACAACTTTTAACTCAATAGATAAGCAAGGAGGATTAGCCTGGAAAGAAACTAAGTACAGGAATTCGTTAATTTGTTTCATGGAAGCGGCCAATCTAGTTGATATATACCGCAAAATTCACCCAAAAATTAAAACCTTCACATATGAATCAAAAACCTTGAAACTAAAATCACGCATTGATTTTTTCTTAATAAGTGGCAAATTTCAGCATGACGTTACAAAAGTGGAAACGCGAGCATCAATCGCACCTGATCATAAAGCAGTCGTTTTGAGCATTAATCTCAATGAGGAATTTAAACGCGGCCCTGGcttatggaaatttaataacactCTTCTTCAAGATGAGTGGTATTTACAGTTAATTAAAGACTATTATCCATATCAACAGGATCTACTGGAATATGAAATACTAAAGAAAGAATTACAAGGTATATACGAAGCTAATGGCAAGGGAGCAATATTCAGATCGAAGGTTAGATGGATTGAAAAAGGAGAAAAGCCTACAAAAAATTTCTTTAACCTCGAGAAAAGAAACTATGACAAAAAGATTATATCACAACTGTATAATGGCGAGGAGGAGCTCTTATCagacttaaaaaaaatagataaagaaatagaaaatcacTTTAgtcaattttacaaaacgaACTTTGATCCTGGAGAAGAAAAGGAGATGCCAAGGAAATTCCAAAGCTTTGTTGAGAATTTGAACCTCACACACCTTGAAGAACATGAAAACCTTGAATTAGAAgctgaaataaacattgaagAGGTTCAAAGTGCGGTGAATAgtttccaaaataacaaaactcccGGCGATGATGGCTTCACAAAAGAATTCTATGAAACCTTCTTTGACCTTATAGGTCCTGCGCTCTTAGATTCATTAAATGCAGGGTTTGAATGTGGAACATTGTCTATATCACAAAGACGAGGAGTTATTTCTTTAATCCCAAAAGACGAAAACAATTTGATGACATTATCTAACTGGCGCCCTATCACTCTGCTCAATGTAGACTACAAGATCCTTTCAAATATCATTGCAAATAGAATTAAACCAGTCTTGCCAAAATTAATCCATCCTGATCAAACAGGGTTTATTAAGGAAAGATTCATCGGACAAAATATCAGACTGTTGAATGAACTAATGGAATATACAGACGAGCAAAAAATACCAGGGATCCTGTTGtttattgactttgaaaaagcctttgatacAATAGAATGGACTTTTATTCAAAATGTACTGAAATGCTTTAATTTTGGTCCTGTTATTAGAAAATGGATCTCAGTACTCTATAAGGACGTAGAAAGTGCTGTTATTAATGGAGGATACTCAAGTAACTACTTTAAAGTATCAAGAGGAGTTCGGCAAGGATGTTCATTAAGCTCCTTGTTATTCGTGTTAGGTGTAGAGATCTTGGCTCAAAAAATAAGGCAGTGTACGAGCTGTCAAGGAATAAAACTTCCGCAATCGGTAGAAGCCAAAATTAGtcaatttgcagatgatacatCGCTCATTTGTAGGGACGTTAACGCGCTCAGAGAATACATGgatgttttaaataaatttaatgacATTTCCGGCcttaaattgaacaagaaaaaaactaaagcaatgtggattggttcagctaaaaataataaaaccaaaCCTTTAGGCTTTCAACCCTATCAAGAACCGATTAAATCACTAGGGTTCGTAGCAACTGTTTGTACTGACTTCTTGTCAAAAGATATTCAGTGGGGCCGAGtaggagaggaccctgggaacgaggttggacttAAAGGGTCTTTCTCGCACTTTTCCTCTGTGGCCTATATTTGGGGAGCTGGGGATGGTGGACAGTTGGGGACTGGTACCAAAGAATGCAGTCTTCTTCCAATAAAATTTCCTGTTCCTTGTGAAGTTTCCCACATAGGCTGTGGGTATGGCTTCACAATAGCAGGTAAAGCAGACAGTCACAGCCTGTGGACAACTGGTCTGAATTCATTTTCACAGCTGGCAAGACAACTATCATCTAGCAGTGGACAAGGTCCATCCACAGTTGATCTCAGTGTAAATACAAGTCTATCATCCAGGGTTCAGCAAATTTCCTGTGGGAGATCACATTCTGCAGTGCTATTGGACAACGGTGAAGTTTTGACCTGTGGGGGACACTTCAATGGACAGTGTGGAGTTGGAGATGTGGATGGAAGTTTTGTCAAGCAATTTACAAAGATACAAAGTCTTCCAGGGAAGATTAAACAGATAGCATGTGGCCTTGATCACACCCTTCTTCTGTGTCATGATGGCAGAGTGGTGTCCTGTGGTTGGGGTGCAGATGGACAGACTGGGCTAGGTCATTTTAAAGATGAGGCAAGTTTTAAACTTATCGAAGGAGAACTGAAAGACGTTCAAATAAAACAAGTCGCTTCTTCAGCAGATTGCTGTTTGGCTCTGTCAGATGAAGGAGAAGTTTTTTCTTGGGGAAACAACGAATACGGTCAGCTGGCTGTTGAGAGTAATGAAGAACAATTTGCAGTCCCTAAAAGAGCGTCATTATTAAAAGGTCTACCAGAGATCACGCAAGTGGCTGCTGGTGGTTCGTTCTGTGTTGCCCTCACTGTCACTGGAGAACTCTACAGTTGGGGCTATGGTGTTCTGGGACATGGTCGCGAGGTTTCCTTTTTGAAGATGCCGAGAAAAATTGAAGAATTTTCTTCCACTGATGAAACTATTGCACGAGTGTTTTGCGGCCCTGATAACACCGCTGTAGTTACAGATACAGGTGCACTGTATACCTGGGGGAGAGGATCATTTGGAAGACTCGGTCTTGGCTCAAAACAAGATCAGTGGATCCCTAAGAAGGTTGATCTTCCTGGTGATGTGTTGGATGTTAGCTGCGGTGTGGACCATATGGCAGCCGTCCTAAAGTGCAGTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13540 all species →	RCC1_2	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00415 all species →	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000408 all species →	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR053035 all species →	Family	Mitochondrial GEF domain-containing protein	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46337 all species →	RCC1-LIKE G EXCHANGING FACTOR-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0070131 all species →	Biological Process	positive regulation of mitochondrial translation	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_22658.6.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.